Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0892 ATGGAAACTCTGTATCCATCTTCTTCTTTTATGCCAAACTCAGACTGGTTCGTTCAAGATTGCATCAGCAGCAGCAACACAGAATGGACGAGAGAGGAGAACAAGAGGTTCGAGAGTGCCCTTGCCATATACGATAAGGAAACCCCAGATAGGTGGCTGAAGGTGGCGGCCATGATCCCAGGAAAAACCGTGTACGATGTGATCAAGCAGTACAGAGAACTCGAAGAAGACATCGGCGAAATCGAAGCGGGTCGGGTCCCGATACCCGGGTATCTGGCTTCTCCTTTCACCTTTGAGTTGGTTGATCACCAGAATTATGATGCATACAGAAAGAGGCCTGTGGCTTTCAAGGGTTCTTCTTCTGATCATGAGAGAAAGAAAGGGGTGCCTTGGACTGAAGAAGAACACAGGCGTTTTCTGATGGGGCTTCTTAAGTATGGCAAAGGAGATTGGAGGAACATATCGAGGAATTTCGTGGTGACAAAGACACCGACACAAGTGGCGAGTCATGCTCAAAAGTACTACATAAGGCAGAAGCTTTGTTCTGGAGGGAACAACAAAAGGAGACCAAGTATACACGACATAACCATTGTTAATCTCACAGAACCTAGTACCAACCCACAAGACAACAACAACAAGCCCCTTCATCAATTCAATGATCATCATCAGTCTCCGATGTTCTCACCAAATCAGATGCCAAATGATATCGATGGGGTTTTCAACCCTAGTTGTGACAACAGTTTCTTGCATTCATCTTCATCTGATATTGATCGTGTCCTTCATGAGGCTTATGGTTTTAGGGCAAATTCTGGGGACTTCAGTAACCCAGCTGCTGTCTTAGGTATTCATGCATTGTAA 858 0.4534 METLYPSSSFMPNSDWFVQDCISSSNTEWTREENKRFESALAIYDKETPDRWLKVAAMIPGKTVYDVIKQYRELEEDIGEIEAGRVPIPGYLASPFTFELVDHQNYDAYRKRPVAFKGSSSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLCSGGNNKRRPSIHDITIVNLTEPSTNPQDNNNKPLHQFNDHHQSPMFSPNQMPNDIDGVFNPSCDNSFLHSSSSDIDRVLHEAYGFRANSGDFSNPAAVLGIHAL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0892 285 CDD SANT 130 174 IPR001005 -
Lele27g0892 285 FunFam Transcription factor SRM1 22 88 - -
Lele27g0892 285 CDD SANT 28 74 IPR001005 -
Lele27g0892 285 FunFam transcription factor MYB1R1 129 180 - -
Lele27g0892 285 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 24 233 IPR043363 -
Lele27g0892 285 ProSiteProfiles SANT domain profile. 131 179 IPR017884 -
Lele27g0892 285 ProSiteProfiles SANT domain profile. 24 79 IPR017884 -
Lele27g0892 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 179 IPR017930 -
Lele27g0892 285 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 126 178 IPR006447 GO:0003677
Lele27g0892 285 Gene3D - 129 180 - -
Lele27g0892 285 SMART sant 127 177 IPR001005 -
Lele27g0892 285 SMART sant 25 77 IPR001005 -
Lele27g0892 285 Gene3D - 21 88 - -
Lele27g0892 285 ProSiteProfiles Myb-like domain profile. 123 175 IPR001005 -
Lele27g0892 285 SUPERFAMILY Homeodomain-like 125 179 IPR009057 -
Lele27g0892 285 SUPERFAMILY Homeodomain-like 27 78 IPR009057 -
Lele27g0892 285 Pfam Myb-like DNA-binding domain 130 174 IPR001005 -
Lele27g0892 285 Pfam Myb-like DNA-binding domain 28 73 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0892 Lele-ChrLele27 16899624 16900574 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele27g0892 Myb_DNA-binding 1.2e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1186 25 7810559 7811509 Lele27g0892 27 16899624 16900574 CCT
Lele27g0892 27 16899624 16900574 Lele25g1185 25 7800085 7803831 CCT
Lele27g0892 27 16899624 16900574 Lele26g1191 26 7749338 7753330 CCT
Lele27g0892 27 16899624 16900574 Lele27g0893 27 16907557 16911150 CCT
Lele27g0892 27 16899624 16900574 Lele28g1183 28 7724630 7728618 CCT
Lele25g1177 25 7738359 7740074 Lele27g0892 27 16899624 16900574 CCT
Lele27g0892 27 16899624 16900574 Lele25g1194 25 7880872 7883036 CCT
Lele27g0892 27 16899624 16900574 Lele26g1201 26 7832432 7835036 CCT
Lele27g0892 27 16899624 16900574 Lele27g0884 27 16832001 16834161 CCT
Lele27g0892 27 16899624 16900574 Lele28g1194 28 7795968 7798222 CCT
Lele27g0892 27 16899624 16900574 Lele28g1184 28 7735073 7736031 ECH
Lele25g1186 25 7810559 7811509 Lele27g0892 27 16899624 16900574 ECH
Lele26g1192 26 7759642 7760603 Lele27g0892 27 16899624 16900574 ECH
Lele27g0892 27 16899624 16900574 Lele25g1186 25 7810559 7811509 ECH
Lele27g0892 27 16899624 16900574 Lele26g1192 26 7759642 7760603 ECH
Lele27g0892 27 16899624 16900574 Lele27g0892 27 16899624 16900574 ECH
Lele28g1184 28 7735073 7736031 Lele27g0892 27 16899624 16900574 ECH
Lele25g1186 25 7810559 7811509 Lele27g0892 27 16899624 16900574 hybridization
Lele26g1192 26 7759642 7760603 Lele27g0892 27 16899624 16900574 hybridization