Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0889 ATGGTACAGCCACTGGACGGCGTTGGAGCAGTTGGTGGCAATGGGGGAGACGTAACTGTTGGGAATGGTGAGAAAGAAGGAGACATCGGTGTACAAGAAGGCTCGAATGATATGAGTTGCGAAGAGAGTGAGGTGGGATATGGCAAGGAGGAAAGGGGAAGGGGAAGGGGAAGGGGAAGGTTAGTTACAGATTTGGCGGCCTCTCCCGTTTCTGCTGCAGCCATTTCATTTCAGTCCGTTTGGATTCGCTGCATGATGATGCTAGATCCAAAGGGCATAGCTATGTCTTTCATCGGTACCCAACAGAAGTGCAAGGCTTGCGAGAAAACGGTCTATCCCGTGGATCAGCTATCCGCTGATGGCGTTGCTTACCATAAAGCTTGCTTCAGGTGCTCTCATTGCAAAGGAACATTAAAGCTAAGCAACTATTCCTCGATGGAGGGTGTTCTCTACTGTAAGCCTCATTATGAGCAGCTCTTCAAGGAGACAGGCAGTTTCAACAAGAACTTCCAGTCACCTGCAAAGCTAGCTGATAAGACAACTCCTGAGCTGGTAACGGTGGAGGGCCAAGCCTATCACAAATCATGTTTCAAGTGTTCACATGGTGGCTGTCCCATATCACCATCAAATTATGCAGCTCTTGAGGGCATTTTGTATTGCAAACACCATTTCTCCCAGCTTTTTAAGGAGAAAGGAAGCTATAGTCATCTTATCAAGTCAGCATCAATGAAAAGAGCAGCCACCCCTGTTCCAGAATCCTAA 762 0.4777 MVQPLDGVGAVGGNGGDVTVGNGEKEGDIGVQEGSNDMSCEESEVGYGKEERGRGRGRGRLVTDLAASPVSAAAISFQSVWIRCMMMLDPKGIAMSFIGTQQKCKACEKTVYPVDQLSADGVAYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGSFNKNFQSPAKLADKTTPELVTVEGQAYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFSQLFKEKGSYSHLIKSASMKRAATPVPES 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0889 253 SMART lim_4 103 155 IPR001781 -
Lele27g0889 253 SMART lim_4 177 223 IPR001781 -
Lele27g0889 253 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 170 - -
Lele27g0889 253 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 237 - -
Lele27g0889 253 ProSiteProfiles LIM domain profile. 167 230 IPR001781 -
Lele27g0889 253 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Lele27g0889 253 ProSitePatterns LIM zinc-binding domain signature. 104 138 IPR001781 -
Lele27g0889 253 MobiDBLite consensus disorder prediction 1 56 - -
Lele27g0889 253 PANTHER OS06G0237300 PROTEIN 183 235 IPR045268 -
Lele27g0889 253 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Lele27g0889 253 CDD LIM1_SF3 100 162 - -
Lele27g0889 253 Gene3D Cysteine Rich Protein 98 168 - -
Lele27g0889 253 Gene3D Cysteine Rich Protein 177 236 - -
Lele27g0889 253 FunFam LIM domain and actin-binding 1 98 168 - -
Lele27g0889 253 Pfam LIM domain 104 159 IPR001781 -
Lele27g0889 253 Pfam LIM domain 184 227 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0889 Lele-ChrLele27 16883378 16888339 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele27g0889 LIM 3.6e-12 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g0889 27 16883378 16888339 Lele27g0889 27 16883378 16888339 ECH
Lele25g1188 25 7823198 7827848 Lele27g0889 27 16883378 16888339 hybridization
Lele26g1195 26 7779338 7781443 Lele27g0889 27 16883378 16888339 hybridization