Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0886 ATGACCATGCCTGACTTTGAGGGTAATCTGCAGAAGCTGCGCGATGATGGAGCCGATGGTGTTGAAATGCCCGACACAGCTCACCAGATTAGCAGAGATTCATGGTTTCAAGTGGGTTTTGTTCTCACCACCGGGATCAACAGCGCATATGTACTTGGATACTCTGGTACCATCATGGTCCCCCTTGGTTGGATATATGGTGTGCTTGGTTTGATTGCTGCTACCGCAATATCATTGTATGCGAATTCCCTTATTGCCAAGCTCCATGAGTTTGGAGGAAAGAGGCATATAAGGTACAGGGATCTTGCTGGATATATATACGGTAGGAAGGCATATTCTCTTACATGGGCGCTGCAGTATGTCAATCTTTTCATGATAAATACTGGCTATATCATTTTGGCTGGTTCAGCACTAAAGGCCGTTTATGTTCTGTTTAGGGATGATCATCAAATGAAGCTTCCATATTTTATTGCCATAGCTGGATTCGTGTGTACAATGTTTGCTGTATGCATTCCCCATCTTTCAGCTCTTAGAGTTTGGCTGGGATTTTCAACAGTCTTCAGCCTAATATATATTGCAACAGCTTTTGCGTTGTCGCTTAAAGATGGTTTGAAATCACCAGCTCGAGATTATAGCATCCCCGGATCAACAACAAGTAAAATATTTACAACAATTGGAGCGTCTGCTAATCTTGTGTTTGCATATAATACAGGAATGCTTCCCGAGATACAGGCAACTATCAGGCAGCCGGTAGTCAAGAACATGATGAAAGCCCTATATTTCCAGTTTACCGTTGGAGTTGCACCTCTTTATTTGGTTACATTTACAGGGTACTGGGCCTATGGTTCTTCCACATCATCCTATTTGCTGAATAATGTAAATGGTCCAGTCTGGTTGAAAGCCACGGCCAACATTGCTACCTTTTTGCAGTCAGTCATCGCATTGCATATATTTGCAAGTCCAATGTATGAGTATTTGGATACTAGATATGGGATCACAGGAAGTGCGTTGGCTCCGAAGAACTTGTCGTTTCGAGTTCTGGTAAGGGGTGGCTACCTGGCCTTCAATACATTTGTGTCTGCTCTCCTGCCTTTCCTTGGAGATTTCATGAGCCTCACAGGAGCTATAAGCACATTCCCTCTGACATTTATACTGGGGAATCATATGTATTTAGTGGCAAAGAAGAACAAACTAACGTCCTTACAAAAGCTCTGGCACTGGCTAAATGTTTGTTTCTTTGGCATCATGTCTGTTGCTGCTGCAATTGCAGCATTACGGCTCATTGCTATTGATTCCAAAACATACAATCTCTTTGCTGATTTATGA 1326 0.4276 MTMPDFEGNLQKLRDDGADGVEMPDTAHQISRDSWFQVGFVLTTGINSAYVLGYSGTIMVPLGWIYGVLGLIAATAISLYANSLIAKLHEFGGKRHIRYRDLAGYIYGRKAYSLTWALQYVNLFMINTGYIILAGSALKAVYVLFRDDHQMKLPYFIAIAGFVCTMFAVCIPHLSALRVWLGFSTVFSLIYIATAFALSLKDGLKSPARDYSIPGSTTSKIFTTIGASANLVFAYNTGMLPEIQATIRQPVVKNMMKALYFQFTVGVAPLYLVTFTGYWAYGSSTSSYLLNNVNGPVWLKATANIATFLQSVIALHIFASPMYEYLDTRYGITGSALAPKNLSFRVLVRGGYLAFNTFVSALLPFLGDFMSLTGAISTFPLTFILGNHMYLVAKKNKLTSLQKLWHWLNVCFFGIMSVAAAIAALRLIAIDSKTYNLFADL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0886 441 PANTHER OS05G0424000 PROTEIN-RELATED 32 423 - -
Lele27g0886 441 Pfam Transmembrane amino acid transporter protein 32 424 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0886 Lele-ChrLele27 16865156 16867547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0886 59 441 Organic Solute Cotransporters AT2G39890 76.240 0.0 616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1191 25 7843674 7846567 Lele27g0886 27 16865156 16867547 CCT
Lele27g0886 27 16865156 16867547 Lele26g1198 26 7794100 7795517 CCT
Lele27g0886 27 16865156 16867547 Lele28g1190 28 7765063 7765373 CCT
Lele25g1185 25 7800085 7803831 Lele27g0886 27 16865156 16867547 CCT
Lele27g0886 27 16865156 16867547 Lele27g0886 27 16865156 16867547 ECH
Lele25g1191 25 7843674 7846567 Lele27g0886 27 16865156 16867547 hybridization
Lele26g1199 26 7796049 7799656 Lele27g0886 27 16865156 16867547 hybridization