Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0885 ATGGGACGTTATCTTAGCATATGCATGATTAGATCAGTTAATTATATTGATGAGTGCATACATATGAATGAGAATGTGGGTGTCACATTGGATTCCTTTAGGGCATATATTCCATTTCCATCAAAACATACTTTTGGAAGTAACACATGCTCATCCTCCATATCTTTAAAACATAAGTTGACATTAGAGATAAGTTCAAGGACCATATTGACTCTTTGGCCAGCAAACAAAAGGACTGCAATTGACTCGAAGTCTTTTGTTTTGATGGCTGCCACTGCAACTACATTCTCACCTTGTGTTTTCAAAATGTTGGTCACAGAGAAGTCTCATGTTGCTGTTGATATAGTAGTAGACAATGGTGGGCGGCGTAGCAGCTCCGTCGGTGGCGGTGGCGATGGCGATGGGGGGCATCCAGAAGCAGCCGACAGTGTAGATAAGGAGCAAAAATCCTCCCACGAGGCATCTGGTGTCGAGGTTGTGGGAGCGCCGGAAAAAGAGAAGGGATCCTCTGCATCGGAGTCTTCGGTGGAGGTGGATTTGGGGAATGCGGTGACTGAAACTGAGATACATTCGGATGAGGTAATGAAGAGGGATTGTAGGATTTGCCATCTTAGTATGGATATGACAAATCAAGAATCTGGGAGCATGGAGCTCGGATGTTCTTGCAAGAACGATTTGGTTGCTGCTCACAAGCAATGTGCTGAGGCTTGGTTCAAGATCAAGGGAAACAAAACCTGTGAAATCTGTGGATCAATTGCGCGAAATGTAACTGGAGCTTTTGAAGTGGAAACAATTGGACAGTGGAATGAGTCAAATAATGATGCCAGCATGGGGGCGCCAACTGGAGGACCTGCGCGGTCCCATGGTGAAAATAGAAGTGTCTGGAGAGGGCACAGATTCTTGAATTTCCTACTAGTCTGTGTGGTTTTTGCCTTTGTCATATCTTGGCTTTTTCACTTCAACGTGCCCTCATGA 975 0.4492 MGRYLSICMIRSVNYIDECIHMNENVGVTLDSFRAYIPFPSKHTFGSNTCSSSISLKHKLTLEISSRTILTLWPANKRTAIDSKSFVLMAATATTFSPCVFKMLVTEKSHVAVDIVVDNGGRRSSSVGGGGDGDGGHPEAADSVDKEQKSSHEASGVEVVGAPEKEKGSSASESSVEVDLGNAVTETEIHSDEVMKRDCRICHLSMDMTNQESGSMELGCSCKNDLVAAHKQCAEAWFKIKGNKTCEICGSIARNVTGAFEVETIGQWNESNNDASMGAPTGGPARSHGENRSVWRGHRFLNFLLVCVVFAFVISWLFHFNVPS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0885 324 PANTHER ZINC FINGER, RING-CH-TYPE 124 323 - -
Lele27g0885 324 CDD RING_CH-C4HC3_MARCH 199 250 - -
Lele27g0885 324 Pfam RING-variant domain 199 249 IPR011016 GO:0008270
Lele27g0885 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 258 IPR013083 -
Lele27g0885 324 ProSiteProfiles Zinc finger RING-CH-type profile. 191 256 IPR011016 GO:0008270
Lele27g0885 324 SUPERFAMILY RING/U-box 194 252 - -
Lele27g0885 324 SMART ringv_2 198 250 IPR011016 GO:0008270
Lele27g0885 324 MobiDBLite consensus disorder prediction 122 180 - -
Lele27g0885 324 MobiDBLite consensus disorder prediction 138 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0885 Lele-ChrLele27 16839664 16845873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0885 130 324 C3H Transcription Factor Family AT5G05830 54.592 1.59e-63 198