Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0880 ATGGAAGCTTTATCTAAGAAGACCGAGCATTTTCAGAAGAAGAAAGATGGGGTTCGGTCCTCTGGGAGTAAAACGGCTAAATCTGAGTCGTTCACCGATTCCAATGCTGAGTCGAGAGAGACGAGTTCGAGTGCATCGAGCTCCTTCGATTCAAGTGAAGAAGCTAAAGCAAAAGGGTCGTCTTCGCCTACTCCTCTTGGCTGGCCCATTCGCAAGGCTACAATTTCCAAGTGCAGTAAATCTGATGACAAGGAAAACCAACCTATTTCCCACGAGGATAGCTCAAACTTTAGCAGAATCGGTTCAAAAATGTCAGAGATTGATATGATGAAGGAAAGGTTTGCAAAATTACTGCTTGGTGAAGATATGTCAGGGTCTGGAAAAGGGGTTTGCACAGCTCTGTCCATCTCAAATGCTATTACTAATCTCTGTGCCACCGTATTTGGGCAATTATGGAGACTAGAACCTCTACCGGATGAAAAGAAAGCAATGTGGCGAAGAGAGATGGAGTGGCTTCTTTGCGTTGGTGATCACATTGTTGAATTAATCCCTTCTTGGCAAACATTTCCCGATGGAAGCAAGCTTGAGGTAATGACCTGCAGGCCGAGGTCGGATCTTTTCATGAATCTTCCAGCTCTTCGCAAACTCGACAACATGCTAATGGAAATATTAGAGAGTTTCACAGGTAGAGAATTTTGGTACGTTGATCAAGGAATTGTGGCCCCAGATTCAGATGGGTCAGGCTCATTTCGGAAGCCAATGCAGAGACAAGAGGAGAAATGGTGGCTTCCTGTGCCTCGCGTGCCTCCTTCAGGTTTGACTGAGAACTCGAGAAAGCAATTGAACCACACACGAGAATGTGCAAACCAAATTCTGAAGGCAGCCATGGCCATCAACGATAATGCTTTAGCTGAAATGGAAGTTCCTGAGTCTTACTTAGAAGCCCTTCCCAAGAATGGAAGAAGCTGTCTGGGGGATTTCATATACCGATACATAACATCAGACCAGTTCTCTTCAGAATGTCTGCTTGATTGCCTCGACCTTTCAAATGAACATGTGGCTCTGGAGATTGCTAACAGAGTGGAAGCTTCTATATATGTATGGCGTAGAAGGACTCATTCGAGACCCCCACCTAATAATCCTAGCCGTTCAACAGCAAAATCATCCTGGGAAATGGTCAGAGATTTCATGGCCGATGGAGACAAGAGAGAATTGCTGGCTGAAAGAGCTGAAAACTTTCTTCTTTCCTTGAAACAGAGGTTCCCTGGTTTAACTCAAACCGCCCTCGACACCAGCAAGATCCAATGCAACAAGGACGTGGGTAAGTCCATTCTGGAGAGCTACTCAAGGGTATTGGAGAGCATGGCGTCTAACATTCTGGCTCGTATTGATGATTTGCTGTATGTGGACGACTTGACGAAACATTCAGACAGGTTTCCGTTGGTTTCATCGACGGTTAGTCATCATCCTCAGCAGAAGTTGTCTCGTCCAATGTCGGTGTCTGTCTCAGGCACTCCTCACAAATCTGTGAGTGGCACCAATAATAACTTCTCACCTGCACCACCGCTCATTAGTCCTGCAAGAGGAGAGAGAACTCCTTTCATCCACAAGAACCACAACAACATCATGAAACCTCATCGTCGTGGCTTTGGGGTGAAAAGGGTATTGTCGAATTATCTTGGGGTAGATACGAAAGCCAAAATATGCAGCAATTCAAGTGAAGTGAATTGTTTGAACTCAAGTACTGCCAATAGAACAGAAACAGAACAACAACCTGAACAGCCAAAGGAATCATCATGTGGGCTGAAAAAATGA 1815 0.4512 MEALSKKTEHFQKKKDGVRSSGSKTAKSESFTDSNAESRETSSSASSSFDSSEEAKAKGSSSPTPLGWPIRKATISKCSKSDDKENQPISHEDSSNFSRIGSKMSEIDMMKERFAKLLLGEDMSGSGKGVCTALSISNAITNLCATVFGQLWRLEPLPDEKKAMWRREMEWLLCVGDHIVELIPSWQTFPDGSKLEVMTCRPRSDLFMNLPALRKLDNMLMEILESFTGREFWYVDQGIVAPDSDGSGSFRKPMQRQEEKWWLPVPRVPPSGLTENSRKQLNHTRECANQILKAAMAINDNALAEMEVPESYLEALPKNGRSCLGDFIYRYITSDQFSSECLLDCLDLSNEHVALEIANRVEASIYVWRRRTHSRPPPNNPSRSTAKSSWEMVRDFMADGDKRELLAERAENFLLSLKQRFPGLTQTALDTSKIQCNKDVGKSILESYSRVLESMASNILARIDDLLYVDDLTKHSDRFPLVSSTVSHHPQQKLSRPMSVSVSGTPHKSVSGTNNNFSPAPPLISPARGERTPFIHKNHNNIMKPHRRGFGVKRVLSNYLGVDTKAKICSNSSEVNCLNSSTANRTETEQQPEQPKESSCGLKK 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0880 604 ProSiteProfiles PRONE domain profile. 97 480 IPR005512 GO:0005085
Lele27g0880 604 MobiDBLite consensus disorder prediction 76 90 - -
Lele27g0880 604 MobiDBLite consensus disorder prediction 580 597 - -
Lele27g0880 604 FunFam Rop guanine nucleotide exchange factor 1 98 338 - -
Lele27g0880 604 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 105 474 IPR005512 GO:0005085
Lele27g0880 604 MobiDBLite consensus disorder prediction 1 22 - -
Lele27g0880 604 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 20 536 IPR038937 GO:0005085
Lele27g0880 604 MobiDBLite consensus disorder prediction 483 530 - -
Lele27g0880 604 FunFam Rop guanine nucleotide exchange factor 14 339 479 - -
Lele27g0880 604 Gene3D PRONE domain, subdomain 1 339 479 - -
Lele27g0880 604 Gene3D PRONE domain, subdomain 1 99 338 - -
Lele27g0880 604 MobiDBLite consensus disorder prediction 23 59 - -
Lele27g0880 604 MobiDBLite consensus disorder prediction 483 521 - -
Lele27g0880 604 MobiDBLite consensus disorder prediction 1 102 - -
Lele27g0880 604 FunFam Rop guanine nucleotide exchange factor 7 307 436 - -
Lele27g0880 604 MobiDBLite consensus disorder prediction 580 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0880 Lele-ChrLele27 16794877 16797288 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1198 25 7927298 7929706 Lele27g0880 27 16794877 16797288 CCT
Lele26g1196 26 7782278 7786532 Lele27g0880 27 16794877 16797288 CCT
Lele27g0888 27 16880523 16882225 Lele27g0880 27 16794877 16797288 CCT
Lele28g1188 28 7752864 7758577 Lele27g0880 27 16794877 16797288 CCT
Lele25g1190 25 7839753 7841052 Lele27g0880 27 16794877 16797288 CCT
Lele27g0880 27 16794877 16797288 Lele28g1197 28 7840679 7843305 ECH
Lele27g0880 27 16794877 16797288 Lele27g0880 27 16794877 16797288 ECH
Lele25g1198 25 7927298 7929706 Lele27g0880 27 16794877 16797288 hybridization
Lele26g1205 26 7882069 7884434 Lele27g0880 27 16794877 16797288 hybridization