Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0868 ATGGCTCCTTCAGAAGTCAATGATCTCTCTCACCCTTGTATATATGGGGATTTTGCTTCCTCATACTCCGAGAGGAAGTCTGGATTTATGAAATGGATTAGTAAGCTTTTCAAAGGTGGGTCCAATCGAGGAAGGGGTGGTCGTCATCTCCACCAGCCTACGGAGGAGAATTTGGTTTGGCGTAATCCAGCAAGATCCTTGGACGACCATTCTAGAGCTCAGAAGGAGAAAGAGGATCTGGACCACGCAATTTCCCTTTCTTTAGCTGATGATTTGAAGAGACCAAATGGATATAGATGGCATGGAGACATTGATGAAGATTATGCGAGTCAATTTCAGGGAAACCAGAACTCATCTGCCCATCCTCCATATACCCGTGCAACATACGGGGAAATTAGGGTATGTGGTGGGTGCAAGCGGGAGATAGCCTACGGGAATTGTTTAAGATGCAATAATACTTTTTTTCATCCAGGGTGCTTTCGCTGTCACTCTTGTCGCTACCCCATTACTGAGCATGAGTTTTCTTTATCAGGGAAGCATCCGTATCACAAGTCCTGTTTCAAAGAGTTGACCCACCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGTCACCCATTTTGGTCCCAAAAATATTGTCCAGCTCATGAATATGATGATACAGCCCGCTGCTGTAGTTGTGAAAGATTGGAGGTACTAATCAAACTAGTGCCGTGTGACGTATGGTTATTATTATTAGTTCTTCAAAAGAAGGAAGGAGAAATTGCTAACAACTATCTTCTGCTTTTTTTAATCTTGAAGTCTTTGAATGCAAAATACTATAGTTTGGAAGATGGGCGGAGTTTATGTTTAGAGTGTATGGAGTCAGCTATTATGGACACTGGAGATTGTCAACCTCTTTACCATGCTATTAGAGATTATTATGAAGGAATGAACATGAAAATAGACCAACAAATTCCTATGCTTCTGGTTGAGAGGCAAGCACTCAATGAAGCTATTGTTGGGGATAAAAATGGTTACCATCACATGCCAGAGACAAGAGGCTTGTGCCTTTCTGAAGAGCTGACTGTCACCAGTATTCATCGAAGGCCAAGAATTGGAGGCCATCGGCTAATCGGAATGAGAACCCAACCTCAAAAGTTAACTAGAAAATGTGAAGTTACAGCCATTCTTGTTCTCTACGGTCTTCCAAGGTTACTCACAGGCGCTATCCTCGCCCATGAGTTGATGCACGGCTGGTTACGCCTTAAAGGTTACCGTAATCTTAATCCTGAAGTAGAGGAAGGAATCTGTCAGGTTCTGTCTTATATGTGGCTTGAGTCAGAAGTGATGCCTGGCCTTAAAAGCATGCCTTCAACTTCAACAGCTTCTTCCTCCTCCTCCTCTTCCTACTACTACTCATCATCATCATCTAAGAAAGGAGCCAAATCTGAAGTTGAAAATAAACTGGGTCAGTTTTTCATGAATCAGATTGCCAATGATTCTTCTCCAGCATATGGGGGTGGCTTTAGAGCTGCTAATGAGGCAGTGAACAGATATGGTTTACGTAGTACTCTTGAACATATTCGTTTGACTGGTAGTTTCCCACTGTAA 1623 0.4239 MAPSEVNDLSHPCIYGDFASSYSERKSGFMKWISKLFKGGSNRGRGGRHLHQPTEENLVWRNPARSLDDHSRAQKEKEDLDHAISLSLADDLKRPNGYRWHGDIDEDYASQFQGNQNSSAHPPYTRATYGEIRVCGGCKREIAYGNCLRCNNTFFHPGCFRCHSCRYPITEHEFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPAHEYDDTARCCSCERLEVLIKLVPCDVWLLLLVLQKKEGEIANNYLLLFLILKSLNAKYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKIDQQIPMLLVERQALNEAIVGDKNGYHHMPETRGLCLSEELTVTSIHRRPRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPGLKSMPSTSTASSSSSSSYYYSSSSSKKGAKSEVENKLGQFFMNQIANDSSPAYGGGFRAANEAVNRYGLRSTLEHIRLTGSFPL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0868 540 CDD LIM_DA1 135 187 - -
Lele27g0868 540 FunFam Protein DA1-related 2 123 188 - -
Lele27g0868 540 ProSitePatterns LIM zinc-binding domain signature. 135 169 IPR001781 -
Lele27g0868 540 PANTHER PROTEIN DA1-RELATED 2 32 539 IPR045218 -
Lele27g0868 540 Pfam Protein DA1 320 535 IPR022087 -
Lele27g0868 540 SMART lim_4 134 186 IPR001781 -
Lele27g0868 540 Pfam LIM domain 135 188 IPR001781 -
Lele27g0868 540 MobiDBLite consensus disorder prediction 62 78 - -
Lele27g0868 540 MobiDBLite consensus disorder prediction 43 78 - -
Lele27g0868 540 Gene3D Cysteine Rich Protein 127 207 - -
Lele27g0868 540 ProSiteProfiles LIM domain profile. 133 193 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0868 Lele-ChrLele27 16707347 16711780 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele27g0868 DA1-like 5.2e-101 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1209 25 8020041 8024492 Lele27g0868 27 16707347 16711780 CCT
Lele27g0868 27 16707347 16711780 Lele27g0868 27 16707347 16711780 ECH
Lele25g1209 25 8020041 8024492 Lele27g0868 27 16707347 16711780 hybridization
Lele26g1226 26 7995943 8000460 Lele27g0868 27 16707347 16711780 hybridization