Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0867 ATGGCCGTCACCGGAGCATTCAACGCCGACGATCGTCGGAGAAGCCCATACGGGCATTGTGATCGGCGGTTGAGTTCGTTCAGAGATATGGAATGGGATAAAGAGAGTAGTGACACTGGTGACAGTAGTGAGTTTTTGTCTGATCTTGAGAATAGTGATGAAGGAGATATGGGTGATGGCTATTTTATGCAATATGTTGTTGTTGGTTTGATTGATGTTTCTTCCAGATTCAGATGGAGGCTCGAGTCTATTGGAGTTGATGAAGTGGTATTAGCCATCAATTACCAACCAGAGGTGATGTTGAACTTCTTGAAGGAATACGAGGCAAAGCTAGGCATCAAGATCACATGTTCGCAAGAAACTGAACCACTGGGTACAGCAGGTCCTCTGGCTCTTGCCAGGGATAAGCCGTTAGATGTCTCTGGAGATCCATTTTTGGTTCTCAACGGTGATGTTATCAGTGAGTACCCATTTAAGGAGATGATAGAATTACATAGATCCCATGGACGAGAGGCATCCATAATGGTGACAAAGGTGACAACACTGAAATGTTTGCAGACTATCTTTCCATGCATGAAGAAAGGTATTCTAACCTCAATTGCTGCCAGCAACAAGGGTCCAGAGTTGTTCACCATAACTAGTTTTTCACCTTGTTCGCTTAATGTGGCTGCTTCCACTATTGATATAAAGTTTTTCACCAAAATTCAGTTGGGGAATGACATGGTTCTCGAGGGGAGGATCATTGTGATTGATTCCGTTAAGAGAAATAATGCATCACATAAGGATGTTAGGGCTGTGGTGGGTTTCATTGTTTCAAACATTTCCTCAAAAGATGTGGTAGATGGGTTTCCTCTTCCTTTCACTTTGCTTACACAAAAAGATGGCAAATCCATTCGCTCTTACTTAAATTCAACAAGTTATTCGACAGCTACTATATTTAAGAGTAAGACAAGGATTCTTTGAACTTCCATGGCTTGCCCTCATGCTTCTGTTGCAGTTGCCTGTCAAGTCATTTCATCCTACATGGTCTCAAGTAACAATCAACCTCCAATGAGTTTGGTATATGATCTTAGTGAATCAGATTATGTGAGTTGGGGTGAGATTGTGAAAAACTGGGTGGTAGATTTTGGGGATCCGTCAATGGCGTTGTTGGTGGCCAGTGGAGGTGATACAGTGAAGTTGTTCGATGCCTCGGTCAAGCCTGGCGATCCTTGCTCATTGAGCTATACCCCTTCTCCTGGATTCCAAGTAAATTCAGTGAAGTGGAACCATACCAATTTGGTTGTGGCCAGTGCTGGAGATGATAAGAAGATCTCGTTGTGGCATAAAAATGGGCAGAGCATGGGTACCATTCCTGTAGCTGGTACTGATAGTGGAGACAAAATAGAGGAGTCTATAATGGCTATTAGCTTCAGTAACAAGGCTTCCAGATATCTATGCTCTGGAGGAAGTGGTCAAGTTGTAAGGATATGGGATTTGCAGAGGAAGCGCTGTATTAAATGGTTGAGAGGTCATACTAGCACTATTACAGGTGTAATGTACAACAGCAAAGATGAACACTTGGCTTCTATCAGCCTTAGTGGGGGCCTTATACTTCATAACCTTGCTTCTGGTGCAAGGGCTGCTGAACTTAAAGACCCAAATGAACAGGTGTTGAGAGTTCTTGATTATTCCCGGATTAGTCGTCACCTTTTGGTGACTGCTGGCGATGATGGTACTGTTCATCTGTGGGATACAACTGGTCGGAGCCCTAAGGTTTCATGGTTGAAGCAACATTCTGCACCGACTGCTGGTATTAGCTTCTCTCCATCCAATGACAAGATAATTGCTAGCGTGGGTCTTGACAAAAAATTATATACTTATGACACTGGTTCTAGAAGACCATCATCTTGTATATCTTATGAGGCACCATTCTCTTCATTGGCCTTTAGGGATGATGGATGGATGCTGGCAGCTGCAACAAGCAATGGTAGGGTTGCTTTCTATGATGTTCGTGGAAAACCACAACCTTTTGTCGTTCTTCATGCTTATGGTAGCTCTGAGGCTGTTACAGGCTTATGCTGGCAAAGGTCAAAACCTGTAAGTGTCAATGAAGCTAATTGCACTGCTGAGACTGCACTTGTGGGAGATGCAGTTGAAGATTCCATCCTTATGCCGGATCCTTTACCTTCTGCAACCTCATCAAGTGTTTCTCTATCTACTGTAGTGTCAAGTTCTAGAAATTCTGGTCGTCTAAATGCCTCCGTTGAAGTATCTTCACTTAAATCATCTAGCAATGGATTGGCATCAAGCATGCTAAATGTGTCTAGTGGAGAGGAAACACCACATCGTACCCATTTATGGCCTGGTGGAAATCTCTCGAGGCTAAATGCTCCACGTTCTAGTTATAACTTCAAAGATGACATGGAGGTTTTCTCCCCTCTTGTGGATGTTCAACCAATAACACCCTCACTATGGGATGAAAATGGAGCAAAGAAGGATAACATATTTGCAGATAGGAAACCTTCATCACTATTGTTTCCTTCATCTAGTAGGAGATTTCCAAATACAGAGGAGGGCAGCACTGATCATCCAATATTTGATTGGAAATCTGGCTCAATTTCCAAGCAGGATGAAACTCGATCTTCATTTCCACCTGTGGAATCAATTGCTCCTCCATCTTCCAAGGATGAAGCTTCTTCAATCACTCCTCCAGAAGCTTGGGGTGGTGAGAGGTTATCTGAAAAATATACCTACCTCCGTCAATCCATCAATGCACCTTCTCGTTTTGGGACATTGGCTTCTGGTGTTCAGACAGCAGGATCTATGTCTTCTGGATTGCAGGCTTCCTCATCATCAGATGTTACTTCTCTTACAACTTCGAGCATCAATTTTGCCAATTTACGCAGCAAAGATGTCTCTACAAGTCAGGAGACTTCATTAGGTTTTCCTGATCACTTGTCTTCTAACCCCTTGTCTATCAATACAAAATCCATTCTCGGACAGGTTAGCCTGGATTCCCCACAAATGTCTTTGACGAGACGATTTTCCACTTATGCGGAGAGAATAAGCACTACATCTACCTTCAGTGATGGAGTATCTCTTTCAGTAGGATCACCTAAGATGAAAAAATCTGGAGCAGAAACCAGAGAAGAACTTCTAAATAGCTTGCTGCTGAAGTCTGATACATCAGTTTCAACAGAATCAAGCTCCATATTACCTGCAAATGGTGTAAACGCACAACAACAGAAAGCATCTCAGTTAGATGCACAGCAAGGTTCTTCGTTTACACTTCAGCTTTTTCAACGAACCTTGGAAGAAACTCTAGATTCGTGTGTGAAACCCATACATGAGGATATGAGGAACCTTCATATTGAAATGTTAAGACAGTTTCATCTGCAGGAGACGGAAATGTTCGGCGTGATGAAATCCATTCTGGAGAACCAAGCTGAGTTGATGAAAGAAGTGAAGTCTCTTCGTCAGGAATTTCAGCAGCTCCGGCAAATGCTTTGA 3492 0.4287 MAVTGAFNADDRRRSPYGHCDRRLSSFRDMEWDKESSDTGDSSEFLSDLENSDEGDMGDGYFMQYVVVGLIDVSSRFRWRLESIGVDEVVLAINYQPEVMLNFLKEYEAKLGIKITCSQETEPLGTAGPLALARDKPLDVSGDPFLVLNGDVISEYPFKEMIELHRSHGREASIMVTKVTTLKCLQTIFPCMKKGILTSIAASNKGPELFTITSFSPCSLNVAASTIDIKFFTKIQLGNDMVLEGRIIVIDSVKRNNASHKDVRAVVGFIVSNISSKDVVDGFPLPFTLLTQKDGKSIRSYLNSTSYSTATIFKSKTRILXTSMACPHASVAVACQVISSYMVSSNNQPPMSLVYDLSESDYVSWGEIVKNWVVDFGDPSMALLVASGGDTVKLFDASVKPGDPCSLSYTPSPGFQVNSVKWNHTNLVVASAGDDKKISLWHKNGQSMGTIPVAGTDSGDKIEESIMAISFSNKASRYLCSGGSGQVVRIWDLQRKRCIKWLRGHTSTITGVMYNSKDEHLASISLSGGLILHNLASGARAAELKDPNEQVLRVLDYSRISRHLLVTAGDDGTVHLWDTTGRSPKVSWLKQHSAPTAGISFSPSNDKIIASVGLDKKLYTYDTGSRRPSSCISYEAPFSSLAFRDDGWMLAAATSNGRVAFYDVRGKPQPFVVLHAYGSSEAVTGLCWQRSKPVSVNEANCTAETALVGDAVEDSILMPDPLPSATSSSVSLSTVVSSSRNSGRLNASVEVSSLKSSSNGLASSMLNVSSGEETPHRTHLWPGGNLSRLNAPRSSYNFKDDMEVFSPLVDVQPITPSLWDENGAKKDNIFADRKPSSLLFPSSSRRFPNTEEGSTDHPIFDWKSGSISKQDETRSSFPPVESIAPPSSKDEASSITPPEAWGGERLSEKYTYLRQSINAPSRFGTLASGVQTAGSMSSGLQASSSSDVTSLTTSSINFANLRSKDVSTSQETSLGFPDHLSSNPLSINTKSILGQVSLDSPQMSLTRRFSTYAERISTTSTFSDGVSLSVGSPKMKKSGAETREELLNSLLLKSDTSVSTESSSILPANGVNAQQQKASQLDAQQGSSFTLQLFQRTLEETLDSCVKPIHEDMRNLHIEMLRQFHLQETEMFGVMKSILENQAELMKEVKSLRQEFQQLRQML 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0867 1163 FunFam Protein NEDD1 377 551 - -
Lele27g0867 1163 ProSiteProfiles Trp-Asp (WD) repeats profile. 564 578 IPR001680 GO:0005515
Lele27g0867 1163 Coils Coil 1135 1162 - -
Lele27g0867 1163 CDD PA_subtilisin_like 199 312 - -
Lele27g0867 1163 Gene3D - 238 318 - -
Lele27g0867 1163 SUPERFAMILY Subtilisin-like 188 335 IPR036852 GO:0004252|GO:0006508
Lele27g0867 1163 MobiDBLite consensus disorder prediction 765 786 - -
Lele27g0867 1163 Gene3D - 354 552 IPR015943 GO:0005515
Lele27g0867 1163 MobiDBLite consensus disorder prediction 1 52 - -
Lele27g0867 1163 SUPERFAMILY WD40 repeat-like 383 689 IPR036322 GO:0005515
Lele27g0867 1163 Pfam WD domain, G-beta repeat 563 578 IPR001680 GO:0005515
Lele27g0867 1163 Pfam WD domain, G-beta repeat 415 441 IPR001680 GO:0005515
Lele27g0867 1163 MobiDBLite consensus disorder prediction 869 894 - -
Lele27g0867 1163 Gene3D - 553 708 IPR015943 GO:0005515
Lele27g0867 1163 SMART WD40_4 444 492 IPR001680 GO:0005515
Lele27g0867 1163 SMART WD40_4 582 622 IPR001680 GO:0005515
Lele27g0867 1163 SMART WD40_4 625 663 IPR001680 GO:0005515
Lele27g0867 1163 SMART WD40_4 537 578 IPR001680 GO:0005515
Lele27g0867 1163 SMART WD40_4 495 534 IPR001680 GO:0005515
Lele27g0867 1163 SMART WD40_4 402 442 IPR001680 GO:0005515
Lele27g0867 1163 MobiDBLite consensus disorder prediction 840 902 - -
Lele27g0867 1163 Pfam Nucleotidyl transferase 83 179 IPR005835 GO:0009058|GO:0016779
Lele27g0867 1163 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 78 203 IPR029044 -
Lele27g0867 1163 SUPERFAMILY Nucleotide-diphospho-sugar transferases 80 179 IPR029044 -
Lele27g0867 1163 MobiDBLite consensus disorder prediction 12 41 - -
Lele27g0867 1163 PANTHER PROTEIN NEDD1 376 1163 IPR044621 GO:0010968|GO:0140496
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0867 Lele-ChrLele27 16684710 16698802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0867 189 245 Subtilisin-like Serine Gene Family AT5G03620 45.614 3.95e-09 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1211 25 8032388 8041222 Lele27g0867 27 16684710 16698802 hybridization
Lele26g1227 26 8009923 8017882 Lele27g0867 27 16684710 16698802 hybridization