Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0862 ATGTGCTTGATTGCTTGTGTGTTGAATAATGTCACTCTTTTTCTCCCTGGATTTGGTGCCACCACTACAAATTTTTGGGATAGCCTTGTCGTTAGGAAAAGCAAGAGGAATATCACAATGAAGGCCCTGATTCTAGTTGGAGGCTTTGGAACAAGACTGAGGCCATTGACACTCAGTGTCCCCAAGCCTCTTGTTGATTTTGCTAACAAACCCATGATCGTGCATCAGATAGAGGCTCTTAAGTCTATTGGAGTTAATGAAGTGGTATTAGCCATCAATTACCAACCAGAGGTGATGTTGAACTTCTTGAAGGAATACGAAGCAAAGCTAGGGATCAAGATCACATGTTCGCAAGAAACTGAACCCCTGGGTACAGCAGGTCCTCTGGCTCTTGCCAGGGACAAGCTGATAGATGGCTCTGGAGATCCATTTTTTGTTCTCAACAGTGATGTTATCAGTGAGTACCCACTTAAGGAGATGGTTCAATTTCATAAATCTCATGGAGGAGAGGCATCCATAATGGTGACAAAGGTAGATGAGCCATCGAAGTATGGTGTGGTTGTCATGGAGGAGGCGACAGGGAAGGTTGAGAAATTTGTGGAAAAGCCTAAGTTGTTTGTTGGTAACAAAATCAATGCTGGAATTTATTTACTGAATCCTTCAGTTCTGGATCGCATTGAGCTAAGGCCCACATCTATTGAGAAAGAGGTGTTTCCAAAGATTGCATCAGAGCAAAAGCTATTTGCAATGGTCCTTCCTGGGTTTTGGATGGACATTGGACAGCCAAGGGACTATATTTCTGGTCTGAGACTCTACCTAGATTCACTGAAGAAAAAATCTTCTTCCAAGTTAGCCACCGGTCCTCACATTGTGGGGAATGTCATAGTGGATGAGACTGCCAAAATTGGCGAAGGATGTCTTATTGGACCTGATGTTGCTATTGGTCCCGGTTGCATCGTCGAGTCAGGTGTTCGTCTCTCCCGCTGCACCGTGATGCGAGGAGTCCGAATTAAGAAACATGCCTGCGTTTCCAGTAGTATTATTGGGTGGCATTCCACCGTAGGACAATGGGCTCGCGTGGAGAACATGACTATTCTCGGAGAAGATGTCCATGTTTGTGATGAGATATACAGCAACGGTGGTGTGGTTCTGCCCCACAAGGAGATCAAGTCCAGCATTTGGAAACCCGAGATAGTAATGTGA 1203 0.4497 MCLIACVLNNVTLFLPGFGATTTNFWDSLVVRKSKRNITMKALILVGGFGTRLRPLTLSVPKPLVDFANKPMIVHQIEALKSIGVNEVVLAINYQPEVMLNFLKEYEAKLGIKITCSQETEPLGTAGPLALARDKLIDGSGDPFFVLNSDVISEYPLKEMVQFHKSHGGEASIMVTKVDEPSKYGVVVMEEATGKVEKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIASEQKLFAMVLPGFWMDIGQPRDYISGLRLYLDSLKKKSSSKLATGPHIVGNVIVDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIKKHACVSSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSIWKPEIVM 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0862 400 CDD M1P_guanylylT_B_like_N 40 273 IPR045233 GO:0004475|GO:0005525|GO:0009298
Lele27g0862 400 FunFam mannose-1-phosphate guanyltransferase beta 40 271 - -
Lele27g0862 400 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 39 272 IPR029044 -
Lele27g0862 400 SUPERFAMILY Nucleotide-diphospho-sugar transferases 40 351 IPR029044 -
Lele27g0862 400 Gene3D Hexapeptide repeat proteins 274 394 - -
Lele27g0862 400 Pfam Nucleotidyl transferase 41 268 IPR005835 GO:0009058|GO:0016779
Lele27g0862 400 Pfam Bacterial transferase hexapeptide (six repeats) 300 334 IPR001451 -
Lele27g0862 400 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 40 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0862 Lele-ChrLele27 16659890 16662680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0862 31 186 Eukaryotic Initiation Factors Gene Family AT4G18300 23.952 1.16e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1215 25 8060525 8063296 Lele27g0862 27 16659890 16662680 CCT
Lele27g0862 27 16659890 16662680 Lele25g1213 25 8048935 8056093 CCT
Lele27g0862 27 16659890 16662680 Lele26g1229 26 8025783 8034998 CCT
Lele27g0862 27 16659890 16662680 Lele27g0865 27 16671551 16675439 CCT
Lele27g0862 27 16659890 16662680 Lele28g1222 28 8035421 8040302 CCT
Lele27g0862 27 16659890 16662680 Lele27g0862 27 16659890 16662680 ECH
Lele25g1215 25 8060525 8063296 Lele27g0862 27 16659890 16662680 hybridization
Lele26g1231 26 8038920 8041368 Lele27g0862 27 16659890 16662680 hybridization