Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0855 ATGGAGGGATCCCATCTTCATCATCATCATCATCAGTACTTGATGTGGCTGAAGAGGAAGCAAACGTTGAAGTCACATATTGATGCCGCAAGGTCGTCTTCGTGGGAAGAGAGGGCTTTTGCAGAAGATGCAGCTAGGATACTTGGTGGCTACGTGTGGCCTCCAAGATCTTACTCTTGTACTTTCTGCAAACGAGAGTTCAGGTCTGCTCAAGCTCTTGGGGGTCACATGAATGTTCACAGAAGGGATAGAGCTAGGCTCAAACAGAGCCAGCAACAACAAACTGTAATTCCTCCTCATGATTGTAAGAGATCTTCTGATTCTTCAGAGGTCAATGGAAGGGAAGAAGAAGATTTTGCAGGCTTTTATAAAAATCATAATAATAATTATGTTGAAACAGACTTGTCCGTGGGATTACTACCTTCATCATCAACAGCTGAAGAAGCTTTTTCTTTAAGTTGTAAGAGAACTAAGACTACTTGTTCCAATATTTCTTCAGTCTTCGTCAAGCCATTCTCAAACGATCACGCAGCAGCAGCAGCAAGCCTGGTTTTCCAATCTGCAGAAATGGTGATCGGAGTTAATAAGCCTAAAATAGAAGACTTGGATCTTGAACTCAGGCTGGGGAAATCACAGAAAGTTCAGTGA 648 0.4259 MEGSHLHHHHHQYLMWLKRKQTLKSHIDAARSSSWEERAFAEDAARILGGYVWPPRSYSCTFCKREFRSAQALGGHMNVHRRDRARLKQSQQQQTVIPPHDCKRSSDSSEVNGREEEDFAGFYKNHNNNYVETDLSVGLLPSSSTAEEAFSLSCKRTKTTCSNISSVFVKPFSNDHAAAAASLVFQSAEMVIGVNKPKIEDLDLELRLGKSQKVQ 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0855 215 Pfam C2H2-type zinc finger 58 82 - -
Lele27g0855 215 PANTHER OS07G0101800 PROTEIN 30 211 - -
Lele27g0855 215 Gene3D Classic Zinc Finger 55 118 - -
Lele27g0855 215 SUPERFAMILY beta-beta-alpha zinc fingers 55 84 IPR036236 -
Lele27g0855 215 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Lele27g0855 215 SMART c2h2final6 58 80 IPR013087 -
Lele27g0855 215 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Lele27g0855 215 MobiDBLite consensus disorder prediction 78 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0855 Lele-ChrLele27 16579450 16580097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0855 36 209 C2H2 Transcription Factor Family AT5G06070 39.810 1.20e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele27g0855 zf-C2H2_6 1.1e-06 CL0361