LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele27g0850	ATGACGGCCTTTCCACTTGCGAAGCCCACGAGGTGCTCGAGCTCTCTCTCCTTGTATCAACTCAATTATGAGTTAGCAAAGGCTTCATTTGATCTGTGGTATTCAAAAATGGCGAATCGGTGGTGGGCCGGTAACGTGGCAATGAGACCGAAAGATCCTTTGTCGTCTTCTCCATCATTTCATCTGAGAAATCCAGAAGATGACCATGGTGGGTTGAACCGATTCGGGGCTGTACGAGTTCAAGACTTTCTAGAAAACACCAATAACAACACCACTACTCAGACCAATAGCAGCAACAGCAACACTAACGCCAACACAAACACAACCTCCCAGAGCCAGAACGCCGACGACGGCGACAGCAGAGATAAGGGGCGTGAAGCAGATGATCAAAACCTAGGTAGCTACGACAGCACGGAGCCGGGCAGCAGCAGCGGTCGCAGGCCCCGAGGCCGCCCTGCTGGGTCGAAGAACAAGCCGAAGCCACCGGTGGTTGTAACAAAGGAGAGTCCTAACGCCCTCCGGAGTCACGTGTTGGAAATCTCCAGCGGCAGCGATGTTGCCGAGAGCCTATCCACCTTCGCGAACCGGCGACACCGTGGTGTGTCGGTGCTCAGCGGGAGTGGCATTGTAACCAACGTCACTCTCCGGCAACCGGCAGCAGCAGCTGGGGTTATCACACTAAACGGAAGGTTCGAGATTCTATCTCTTTCCGGGGCATTTTTGCCGGCCCCGTCACCACCCGGGGCCACCGGGCTAACCGTGTACCTCGCCGGCGGACAAGGGCAGGTTGTCGGTGGAGCTGTGGTGGGTTCACTGGTAGCATCAGGGCCTGTATTGGTGATTGCGGCGACATTCGCAAATGCCACTTATGAGAGATTGCCACTTGAAGCTGAGCCATGTGGAGAAGATCAAGTTGAAGGGAAAACACAGCAACAGCAACAATCAGGAGTGAATTATGCAGCAACTTCTGGTGGTGGTCCTTCATCGACATCTCAAGCTATGAACGAAGAACAAGTTTCGATGCCGATGTTCAATAATTTGCCGCCAAATTTGATACCAAACAATGGTCAAATGCAACATCATGAGGTGTTCTGGGGGACCCCAGCTCGCCATCCTCCTTCTTACTGA	1128	0.5328	MTAFPLAKPTRCSSSLSLYQLNYELAKASFDLWYSKMANRWWAGNVAMRPKDPLSSSPSFHLRNPEDDHGGLNRFGAVRVQDFLENTNNNTTTQTNSSNSNTNANTNTTSQSQNADDGDSRDKGREADDQNLGSYDSTEPGSSSGRRPRGRPAGSKNKPKPPVVVTKESPNALRSHVLEISSGSDVAESLSTFANRRHRGVSVLSGSGIVTNVTLRQPAAAAGVITLNGRFEILSLSGAFLPAPSPPGATGLTVYLAGGQGQVVGGAVVGSLVASGPVLVIAATFANATYERLPLEAEPCGEDQVEGKTQQQQQSGVNYAATSGGGPSSTSQAMNEEQVSMPMFNNLPPNLIPNNGQMQHHEVFWGTPARHPPSY	375

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele27g0850	375	Pfam	Plants and Prokaryotes Conserved (PCC) domain	174	286	IPR005175	-
	Lele27g0850	375	SUPERFAMILY	AF0104/ALDC/Ptd012-like	170	297	-	-
	Lele27g0850	375	MobiDBLite	consensus disorder prediction	116	132	-	-
	Lele27g0850	375	MobiDBLite	consensus disorder prediction	52	73	-	-
	Lele27g0850	375	ProSiteProfiles	PPC domain profile profile.	170	306	IPR005175	-
	Lele27g0850	375	FunFam	AT-hook motif nuclear-localized protein	173	300	-	-
	Lele27g0850	375	MobiDBLite	consensus disorder prediction	88	170	-	-
	Lele27g0850	375	CDD	DUF296	174	256	IPR005175	-
	Lele27g0850	375	Gene3D	-	173	308	-	-
	Lele27g0850	375	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15	101	367	IPR014476	GO:0003680
	Lele27g0850	375	MobiDBLite	consensus disorder prediction	300	334	-	-
	Lele27g0850	375	MobiDBLite	consensus disorder prediction	305	334	-	-
	Lele27g0850	375	MobiDBLite	consensus disorder prediction	88	115	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele27g0850	Lele-ChrLele27	16544265	16546817	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele27g0850	37	375	AT-hook Motif Nuclear Localized (AHL) Family	AT3G55560	50.847	6.36e-79	243