Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0837 ATGGCTACGGGGATATCTTATTGGTGTTACAGATGCAGTCGGTTTGTGAGGGTCCGGCGGCAGGACACGGTGGTGTGTCCCGACTGTGACAGTGGATTCGTGGAGGAGATTGAGCAAATGCCTCGGCCTGCTTCCACCGTGGAGTCGCGCAGGCGGAGGTTCCCGGCGGCTTCGATGTACATGATTGGTAATCAGAACCCCAATTCTGGACAGACTCTGCGTCCTGCTTTGAGGAGGACTCGTCGGAGCAACGGCGGCGATCTTTCTATGGTTAACCCGGTTGTTGTGCTCCGTGGATCCCCTCAACGGGCGAGTCATGATTCCGGGGGAGGACATGGGCGTGGGTTTGAGCTTTATTACCAAGATGAGTCAGGCTCCGGTCTCCAGCCTCTGCCTCCGAACATGTCAGAGATGCTTCTGGGATCTGGAATCGACAGGCTTCTGGAACAACTTTCTCAGATTGAAATGAACGGTATTTCGCGTTTCGAGCAACCTCCGGTTTCCAAAGCTGCAATTGATTCATTGCCGACGGTTGAGATTCATGATAATCATCTTGCGACGGAATCACACTGCGCCGTTTGTATGGAACTTTTTGAATTGGGCACAAATGCTCGTGAATTACCTTGCAGGCACATTTACCATTCGGAATGCATCTTGCCGTGGCTTGCGCTCCGGAATACTTGCCCTGTTTGCCGGCAGGAGCTCCCGGCAGATGCGCAGAACGTTAACGGTCCTGGTTCTGGGAATTCTCTCTCTTTGAACGACGATGACAATGTGGGATTGACCATTTGGAGGCTTCCTGGAGGTGGCTTTGCGGTGGGAAGGTTCGCTGGCGGGAGAAGAAGTTCTTCTGAACGTGAGCTTCCTGTTGTGTACACAGAAATGGACGGTGGTCTCGGAAACGGCGGCCAACCGAGGAGGGTGACTTGGTCGACGACGACGGACAGTCGAGGAAGAGACAGTGGAGGTGGAGGATTCCGCAAAATGTTTCGCAATCTCTTTGGTTGCTTCACTCCTGGACATCGAAATCAATTCTCTGCTTCTACTTCATCTTCTTCGTCATCTTCTTCTTCTCCTTCTCCAGAACCTCGAACCTTCAGGAGTATTAATACTTCTCGTTCTCGTCCCATCGTGAATAATACCATAATGCGTTCCCGAAGAACCTGGTCTCTGGACGGCAATGGCGGAACCAGACCATGGTGA 1203 0.5245 MATGISYWCYRCSRFVRVRRQDTVVCPDCDSGFVEEIEQMPRPASTVESRRRRFPAASMYMIGNQNPNSGQTLRPALRRTRRSNGGDLSMVNPVVVLRGSPQRASHDSGGGHGRGFELYYQDESGSGLQPLPPNMSEMLLGSGIDRLLEQLSQIEMNGISRFEQPPVSKAAIDSLPTVEIHDNHLATESHCAVCMELFELGTNARELPCRHIYHSECILPWLALRNTCPVCRQELPADAQNVNGPGSGNSLSLNDDDNVGLTIWRLPGGGFAVGRFAGGRRSSSERELPVVYTEMDGGLGNGGQPRRVTWSTTTDSRGRDSGGGGFRKMFRNLFGCFTPGHRNQFSASTSSSSSSSSSPSPEPRTFRSINTSRSRPIVNNTIMRSRRTWSLDGNGGTRPW 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0837 400 CDD RING-H2_RNF126_like 191 232 - -
Lele27g0837 400 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Lele27g0837 400 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 83 236 - -
Lele27g0837 400 FunFam E3 ubiquitin-protein ligase RING1-like 153 238 - -
Lele27g0837 400 Pfam Protein of unknown function (DUF1117) 259 358 IPR010543 -
Lele27g0837 400 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Lele27g0837 400 SMART ring_2 191 231 IPR001841 -
Lele27g0837 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 238 IPR013083 -
Lele27g0837 400 MobiDBLite consensus disorder prediction 294 324 - -
Lele27g0837 400 MobiDBLite consensus disorder prediction 344 375 - -
Lele27g0837 400 SUPERFAMILY RING/U-box 171 238 - -
Lele27g0837 400 Pfam Ring finger domain 190 232 IPR001841 -
Lele27g0837 400 MobiDBLite consensus disorder prediction 305 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0837 Lele-ChrLele27 16426063 16427265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0837 128 241 C3H Transcription Factor Family AT5G01980 42.105 1.24e-24 103