Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0836 ATGTTAGAACTAGCATCTTGGAATGTGCATAATCCTCAACCCAGAAATTGGTTAATTAGTGGAGTCTCAATTCACTTTTCCCAAGCACATAGAGCCATGAGTTTTGTTTTGAGAGGAACAAGAGCAGACATAGAAACTGGATATCCTGGATTTATTCCTGAGAGACATGCATTGCGTGTTCATGCAGCACGGCCTACTAATTCCAATTCACTTACTTTTCTTGTTACAGTTCTCCTGCTATTCATGATACTGAACTCTCACCAGATGTCACCAAATTTTCTGCTTTGGCTAGTGCTAGGTGTCTTCTTGATGGCTACAATGTTAAGGATGTATGCAACTTGTCAGCAGCTTCAAGCTGAGGCTCATGCCCATGCAGCAGCAGGCAGTGGTGGCCTTCTTGGGCACACTGAAGTACGGTTACATATGCCGCCATCAATGGCACTTACCACCCGAGGACGTCTACAAGGCCTTAGACTTCAGCTTGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCGCTGGATTCAGATAATGCTCCGCCTGCACCTTCTATGACTGATGAAGAGATAAATGCTCTTCCTGTTCACAAATACAAGGGTTCTGGTCTCCAGAACAGGAAATCCTCAATGCAACAGACCTCATCTTCCACCTTTGCTGAGAAGAAGCAAGATACGTCAAATGCAGTGGGCGGTACAAAAGCCTCTGATGATGAGCTGACCTGCAGTGTATGTTTGGAGCAAGTTAACGTTGGGGATCTACTCCGTAGCTTGCCCTGCTTACATCAGTTTCATGCCAATTGCATTGACCCATGGCTGCGGCAACAAGGAACATGTCCTGTATGTAAATTCAGAGCAGGATCTACGTGGCATGAAAGTGACCAGAATGAAGTTGATGCTTCAGACATGGTTTGA 927 0.4488 MLELASWNVHNPQPRNWLISGVSIHFSQAHRAMSFVLRGTRADIETGYPGFIPERHALRVHAARPTNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAEAHAHAAAGSGGLLGHTEVRLHMPPSMALTTRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPPAPSMTDEEINALPVHKYKGSGLQNRKSSMQQTSSSTFAEKKQDTSNAVGGTKASDDELTCSVCLEQVNVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSTWHESDQNEVDASDMV 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0836 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 291 IPR013083 -
Lele27g0836 308 PANTHER TARGET OF ERK KINASE MPK-1 34 292 - -
Lele27g0836 308 MobiDBLite consensus disorder prediction 207 237 - -
Lele27g0836 308 MobiDBLite consensus disorder prediction 206 237 - -
Lele27g0836 308 CDD RING-H2_PA-TM-RING 245 287 - -
Lele27g0836 308 SMART ring_2 246 286 IPR001841 -
Lele27g0836 308 SUPERFAMILY RING/U-box 241 290 - -
Lele27g0836 308 Pfam Ring finger domain 245 287 IPR001841 -
Lele27g0836 308 ProSiteProfiles Zinc finger RING-type profile. 246 287 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0836 Lele-ChrLele27 16416772 16419818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0836 33 308 C3H Transcription Factor Family AT3G55530 73.285 1.05e-136 386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g0836 27 16416772 16419818 Lele28g1252 28 8278525 8282229 ECH
Lele27g0836 27 16416772 16419818 Lele27g0836 27 16416772 16419818 ECH
Lele25g1246 25 8293914 8300503 Lele27g0836 27 16416772 16419818 hybridization
Lele26g1260 26 8249147 8252341 Lele27g0836 27 16416772 16419818 hybridization