Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0832 ATGCCTTTCATCTCGCAAACCCAACGTCAGTCTGATTACAATCTCTTCAGTTCCACCACCCCGATCGTCATTGACAATGGCGCATCATATTTTCGTATCGGATGGGCAGGAGAGACTGAACCCCGTGTTGTTTTCCGCAACATTGTGCAAAGGCCACGCCATAAAGTCACCGGTGAAACTGTTACTATTGTTGGTGATCATAATCCAGCATTAATGAAATACTTTGACTGCACTCGCTCTGGACCACGCTCAGCATTTGATAGCAATGTTGTTTACCAGTTTGAAATAATGGAATACATTCTTGACTTTGGCTTTGACCGGATAGGTGCAAATGGATCAGAGATTGATCATCCTGTCCTGATCACAGAATGCGTGTGTAATCCAGTTCAATCTCGTAGTAAAATGGCAGAACTTCTTTTTGAGACTTATGGTGTTCCATCAATAGCCTTTGGGGTTGATGCAGCTTTCAGCTACAAGTATAATCAACACCATGGAGTTTGCAATAAAGATGGTCTTGCTATGTGTCCTGGATTTACCACAACCCATGTGATTCCGTTTGTAGATGGGGAACCTGCTTATAAAGGATGCTGCCGTACAAATATTGGTGGCTTCCATGTAACTGATTATTTAAAGCAACTTCTTTCGCTTAAATATCCCTACCATTTGGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATAGTTACATTGCACAGGATTATGCTTCTGAAGCTCGGTTGTTTCAGAGAGGAGGGAAGGAAGCTGAAGAGAAAACCAGATGTTGGCAGCTCCCTTGGGTTCCGCCACCAATTGAAGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATTAGAGAGAAACAAGGTCAAAGGTTGCGAGAAATGGCTGAGGCAAAGAGATCATCCAGAATAAATGAACTGGAAAATGAATTGCATGGCTTGGAGTTTCTCTTACAGCAGTTTGAGCAAGTAGCGGAGAGTGACATTCCATCTTTCCTATCAGAGACTGGCTATGTCTCGAAGCAGGAGATAGAATCTGCCCGTGTCAAAGTTACACAATCTTTACGGAAAGCAAAAGGTGAACCAAAGAGTGAACAAGCTGAAACTGAAAAGGCTGACTCTGCTAATAACGAGAAGCATTCTCTTATAAACATCCCTGATGAAACACTAACCCCAGAACAGCTTATTGAAAAGAAGAAGCAGTTGTCACTCAAGTCCATGTCTGAAGGGCGGCAGCGATCAAAACAGAAACGCCATGAGGAGGAAATGCAACGGGAGAGGATATTACAGCTAGAGGAGGAGAAACGCCTAGAGAACCCAGAGCTGTACCTGGAGCAATTGCATGCTAAATACAAAGATCTATCAGAAAAAGTTGACCAACGAAAAAGACTCAAGACAAATGGAAATCACACAAACGGAAATAATTTGTCAGGTGGTGTTGGTCGTGGTGAGAGGCTAAATGCTGCTCATAGGGAAAGAATGCGCCTGTTGACAACTGCAGCCTTTGATCGCGGTAAAGGTGAGGATACATTTGGTGCCAGAGATGAAGATTGGCAACTTTACAAATTGATGAGCAAGGACAATGACGATGATGATGAGGGACCAGACGAGGATGAGACAGAATTGGCCCGCATCTCTTCAAGGCTCCAGGATTTGGATCCTACATTTGTACCTAAGTCAGAAACAGGTAACGCGCAGTCTGCTGAGGCGGTGCCACGTATTCGACCTCTCACCAAAGAGGATTTTCAGATTGTTCTTGGGGTCGAAAGATTCAGATGCCCTGAGATTTTGTTCAACCCAAACTGGATTGGGATTGATCAGGTAGGATTAGACGAGATGGCCGGGGTCTCGATAAGGAGGGTGCCAGACAAGAATGAAAGCTTGGAAGAGAGACTAACTGATTCGATACTCGTGACTGGTGGAAGTTCTCTTTTTCCTGGTATGATTGAACGACTTGAAGCTGGGATTAGGATGATTAGACCCTGCGGATCTCCCATTAAAATAGTTAGAGCATTGGATCCAGTTTTGGATGCATGGAGGGGGGCTTCTGCTTATGCCTCAGCTTCACTGTTTCATACTCAAACGTTCAGTAGGTCGGATTATTATGAAAAGGGTGAAGATTGGCTTCGCAGTTATCAGCTTCAATATACATTGTAG 2172 0.4411 MPFISQTQRQSDYNLFSSTTPIVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKVTGETVTIVGDHNPALMKYFDCTRSGPRSAFDSNVVYQFEIMEYILDFGFDRIGANGSEIDHPVLITECVCNPVQSRSKMAELLFETYGVPSIAFGVDAAFSYKYNQHHGVCNKDGLAMCPGFTTTHVIPFVDGEPAYKGCCRTNIGGFHVTDYLKQLLSLKYPYHLARFTWEKVEDLKMEHSYIAQDYASEARLFQRGGKEAEEKTRCWQLPWVPPPIEEPPSEEEIARKAAIREKQGQRLREMAEAKRSSRINELENELHGLEFLLQQFEQVAESDIPSFLSETGYVSKQEIESARVKVTQSLRKAKGEPKSEQAETEKADSANNEKHSLINIPDETLTPEQLIEKKKQLSLKSMSEGRQRSKQKRHEEEMQRERILQLEEEKRLENPELYLEQLHAKYKDLSEKVDQRKRLKTNGNHTNGNNLSGGVGRGERLNAAHRERMRLLTTAAFDRGKGEDTFGARDEDWQLYKLMSKDNDDDDEGPDEDETELARISSRLQDLDPTFVPKSETGNAQSAEAVPRIRPLTKEDFQIVLGVERFRCPEILFNPNWIGIDQVGLDEMAGVSIRRVPDKNESLEERLTDSILVTGGSSLFPGMIERLEAGIRMIRPCGSPIKIVRALDPVLDAWRGASAYASASLFHTQTFSRSDYYEKGEDWLRSYQLQYTL 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0832 723 Gene3D - 683 711 - -
Lele27g0832 723 PANTHER ACTIN 21 711 IPR004000 -
Lele27g0832 723 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Lele27g0832 723 Pfam Actin 588 715 IPR004000 -
Lele27g0832 723 Pfam Actin 19 361 IPR004000 -
Lele27g0832 723 MobiDBLite consensus disorder prediction 551 575 - -
Lele27g0832 723 SMART actin_3 19 719 IPR004000 -
Lele27g0832 723 MobiDBLite consensus disorder prediction 397 430 - -
Lele27g0832 723 MobiDBLite consensus disorder prediction 359 430 - -
Lele27g0832 723 FunFam Actin-related protein 5 18 170 - -
Lele27g0832 723 Coils Coil 309 329 - -
Lele27g0832 723 Coils Coil 449 469 - -
Lele27g0832 723 Gene3D Actin; Chain A, domain 4 203 253 - -
Lele27g0832 723 Gene3D - 176 202 - -
Lele27g0832 723 SUPERFAMILY Actin-like ATPase domain 18 159 IPR043129 -
Lele27g0832 723 FunFam ARP5 actin-related protein 5 homolog 613 682 - -
Lele27g0832 723 FunFam Putative actin-related protein 5 683 711 - -
Lele27g0832 723 SUPERFAMILY Actin-like ATPase domain 170 716 IPR043129 -
Lele27g0832 723 MobiDBLite consensus disorder prediction 359 382 - -
Lele27g0832 723 FunFam Actin-related protein 5 203 257 - -
Lele27g0832 723 MobiDBLite consensus disorder prediction 468 487 - -
Lele27g0832 723 Gene3D - 613 682 - -
Lele27g0832 723 Gene3D - 18 444 - -
Lele27g0832 723 Coils Coil 419 439 - -
Lele27g0832 723 Gene3D Actin; Chain A, domain 4 547 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0832 Lele-ChrLele27 16354282 16359775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0832 589 710 Cytoskeleton Gene Families AT3G12110 32.787 1.13e-16 80.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1251 25 8355772 8361176 Lele27g0832 27 16354282 16359775 CCT
Lele27g0832 27 16354282 16359775 Lele27g0832 27 16354282 16359775 ECH
Lele25g1251 25 8355772 8361176 Lele27g0832 27 16354282 16359775 hybridization
Lele26g1263 26 8305379 8313664 Lele27g0832 27 16354282 16359775 hybridization