Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0823 ATGGGTTGCTGCTTTAGTGCGAGAATCAAAGCTGAAAGCCCTCCACGAAAGGCTAGGAACTCATGCCATGACAACAAAGAAGAGGATGTTTTGATGGGTTCAAGCAGCAAGTTCTTCACTTCCTCGGTTCCTCCAACCCCTCGAACGGAGGGTGAGATCTTGCAGTCCTCCAATTTGAAAAATTTCACATATAATGAGCTAAGAACAGCTACAAGGAACTTTCGTCCGGACAGTATGGTCGGCGAAGGTGGGTTTGGCGGCGTATTTAAGGGGTGGCTTGATGAGCAGACACTTGCCCCGGCTAAACCGGGCACCGGGATAGTCATTGCTGTTAAGAAGCTTAACCAAGAAAGTTTCCAGGGACACAATGAATGGTTGACAGAGATCAATTTTTTGGGACAGCTGCATCATCCTAACCTTGTGAAATTGATTGGCTACTGCTTAGAGGATGAACATCGGCTTTTGGTATACGAGTTTTTGACCAAAGGCAGCTTGGATAATCATTTATTTCGAAGGACATCTCATGTGGAACCACTTTCTTGGAGCAACCGAATGAAAATTGCCCTTGATGCTGCCAAAGGTCTTGCATTTCTTCATAGCGATGGAGTAAAAGTGATATATCGAGACCTAAAAGCTTCTAATATCTTGCTTGACTCAAACTTCAATGCAAAGTTATCTGATTTTGGATTGGCAAAGGATGGGCCATCGGGTGATAAGAGCCATGTCTCTACAAGGGTCATGGGCACATATGGCTATGCTGCTCCTGAGTATATGGCCACAGGTCACCTGACCAAGAAGAGTGATGTATACACTTTCGGGGTCGTTCTGCTCGAAATTATGTCAGGCAAACGTGCCTTGGACAGAAACAGGACAGCTAGGGAACAGAATTTAGTCGAATGGGCAAAGCCGTACATTTCAAGCAAGCGCAGGATTTTCCAAGTCATGGATGCTCGTATAGAAGGCCAGTACCTGGTACGTGAAGCCATGAAAGTAGCTAAAATCGCTATCCAATGCCTGTCTGTTGAACCCCGGTTCAGACCGACCATGGCTGACGTGGTAAGAGCATTGGAACAGCTTCAGGATCCCAGTGATACAGGTAGCTCAACTGGTAGTAGCAATAGTAATGTTCCTAAACAGCATAAAAGAAGTTCGAATGAATCTTTGAAATCTTTGAATGGAGCTGGTTCTTCTGAGCCAAGATCATCTCCTTGTTCCACATAA 1221 0.4529 MGCCFSARIKAESPPRKARNSCHDNKEEDVLMGSSSKFFTSSVPPTPRTEGEILQSSNLKNFTYNELRTATRNFRPDSMVGEGGFGGVFKGWLDEQTLAPAKPGTGIVIAVKKLNQESFQGHNEWLTEINFLGQLHHPNLVKLIGYCLEDEHRLLVYEFLTKGSLDNHLFRRTSHVEPLSWSNRMKIALDAAKGLAFLHSDGVKVIYRDLKASNILLDSNFNAKLSDFGLAKDGPSGDKSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYTFGVVLLEIMSGKRALDRNRTAREQNLVEWAKPYISSKRRIFQVMDARIEGQYLVREAMKVAKIAIQCLSVEPRFRPTMADVVRALEQLQDPSDTGSSTGSSNSNVPKQHKRSSNESLKSLNGAGSSEPRSSPCST 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0823 406 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g0823 406 PANTHER OS01G0588500 PROTEIN-RELATED 35 360 - -
Lele27g0823 406 CDD STKc_IRAK 105 359 - -
Lele27g0823 406 MobiDBLite consensus disorder prediction 360 406 - -
Lele27g0823 406 FunFam Serine/threonine-protein kinase PBS1 160 374 - -
Lele27g0823 406 MobiDBLite consensus disorder prediction 359 406 - -
Lele27g0823 406 ProSitePatterns Protein kinases ATP-binding region signature. 80 113 IPR017441 GO:0005524
Lele27g0823 406 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Lele27g0823 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Lele27g0823 406 Gene3D Transferase(Phosphotransferase) domain 1 160 383 - -
Lele27g0823 406 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Lele27g0823 406 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
Lele27g0823 406 SMART serkin_6 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g0823 406 SUPERFAMILY Protein kinase-like (PK-like) 46 356 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0823 Lele-ChrLele27 16285229 16288311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0823 1 389 Glycoside Hydrolase AT3G07070 42.410 4.53e-107 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele27g0823 PK_Tyr_Ser-Thr 1.5e-48 CL0016