Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0819 ATGAGGAAGCCTTGCTGTGACAAAGAAGACACCAACAAAGGAGCTTGGTCTAAACAAGAAGATCAAAAGCTCATCGATTACATCCAAACCCATGGTGAAGGTTGCTGGCGTTCCCTTCCCAAAGCTGCAGGGCTTCATCGTTGTGGAAAGAGTTGCAGGTTGAGATGGATAAATTATTTGAAGCCTGATATCAAACGTGGAAACTTTGCTCAAGACGAAGAAGACCTCATCATCAAGCTCCATGCCCTCCTCGGCAACCGGTGGTCCCTGATAGCTGGAAGGTTACCAGGAAGAACAGACAATGAGATAAAGAACTATTGGAATTCTCACATCCGCAGAAAGCTGATGAAGATGGGGATAGACCCTGAGAACCATAAGCTTATTCATCTTCATCACCAAAGCTTTCCTCTTCTTTATCGTCGTCCTTCTCCTCATGCTGCTGCTGCAACTTCCTCTGACTCCTTCATCAAGGAAAACCCTAATAATTCCAATAACTTGAATCTTGACCTCACTATTGCTTTTCCTTCTCGCGCAGTACCAAACCCAAACTTATCTGCTGATTCATCCCACAATAATAATACTACTAAGGACATGGAACAAAGCCAATCAGCTCCAACTCTTCCTCTATTTAACTAG 636 0.4387 MRKPCCDKEDTNKGAWSKQEDQKLIDYIQTHGEGCWRSLPKAAGLHRCGKSCRLRWINYLKPDIKRGNFAQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEIKNYWNSHIRRKLMKMGIDPENHKLIHLHHQSFPLLYRRPSPHAAAATSSDSFIKENPNNSNNLNLDLTIAFPSRAVPNPNLSADSSHNNNTTKDMEQSQSAPTLPLFN 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0819 211 CDD SANT 15 60 IPR001005 -
Lele27g0819 211 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 193 - -
Lele27g0819 211 CDD SANT 68 111 IPR001005 -
Lele27g0819 211 FunFam MYB-related transcription factor 12 65 - -
Lele27g0819 211 FunFam MYB transcription factor 67 128 - -
Lele27g0819 211 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lele27g0819 211 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Lele27g0819 211 Gene3D - 68 134 - -
Lele27g0819 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Lele27g0819 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Lele27g0819 211 SMART sant 12 62 IPR001005 -
Lele27g0819 211 SMART sant 65 113 IPR001005 -
Lele27g0819 211 Gene3D - 13 65 - -
Lele27g0819 211 MobiDBLite consensus disorder prediction 181 211 - -
Lele27g0819 211 MobiDBLite consensus disorder prediction 179 211 - -
Lele27g0819 211 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lele27g0819 211 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lele27g0819 211 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0819 Lele-ChrLele27 16245475 16246830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0819 2 188 MYB Transcription Factor Family AT4G09460 53.881 2.28e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele27g0819 Myb_DNA-binding 1.9e-14 CL0123