Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0815 ATGGAGCTTGAGTACCAGAAGCCTGCAGTGCTTGAGGAAGAAGATGGGTTCAGCAATGATTCTGCCATAACCCATTCTCCTTCTCCTTCTGCAAATGGATTTGTTTATAAGGCCACAACAAGCAATCATATTCCTGAGGAAGCAAAGTCTCTCATCAACTTCAAAGCCATTAATAATGGTGGTGAATCTTTGCTTAGCTTTCAGCAGAAAGATCACTGTTTGTGGGAAAATAATAATGGTTTACATCATCAGTGGAATCATCAGAATTCAATCCCAAGACTGATTCAGGATTTTAATTGCATTCAAACTGCAAGTGGCTATGGAGGATCAAAAGAGATGCAGCAGCAGCAGCAATGTGAGAGTTCGTATGGGTGGCTATATTCTGAACCAAGTGTTCCTTCTGATAATAACAGGCTTCAAGATTCTTCACCAAGATCAGCAAAAGAAGCATCCTTCAACAATAAGCGCCTTTCAATGGGAGAGAGCATGCAAGCGTCGAAGAAGCAATGCACTGCTGCAAGTAAAAGTACACAAAAACCAACAAAGTCAAACCCATCTAAGGATCCTCAAAGTATAGCAGCCAAGAACAGAAGGGAGAGGATAAGCGAGCGACTCAAGATACTTCAAGAACTAGTTCCTAATGGCTCCAAGGTTGATTTGGTGACCATGTTAGAGAAAGCCATTAGTTATGTCAAGTTTCTTCAACTGCAAGTGAAGGTACTGGCAACTGATGAATTTTGGCCAGTGCAAGGAGGAAAAGCGCCTGATATTTCTCAAGTAAAAGAAGCCATTGATGCCATTCTTTCATCTAAGAGCTCATCATCAACCTCAAAGCAACCGAAATGA 846 0.4149 MELEYQKPAVLEEEDGFSNDSAITHSPSPSANGFVYKATTSNHIPEEAKSLINFKAINNGGESLLSFQQKDHCLWENNNGLHHQWNHQNSIPRLIQDFNCIQTASGYGGSKEMQQQQQCESSYGWLYSEPSVPSDNNRLQDSSPRSAKEASFNNKRLSMGESMQASKKQCTAASKSTQKPTKSNPSKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVKEAIDAILSSKSSSSTSKQPK 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0815 281 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 234 IPR011598 GO:0046983
Lele27g0815 281 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 48 250 IPR045843 GO:0003700|GO:0006355
Lele27g0815 281 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 244 IPR036638 GO:0046983
Lele27g0815 281 MobiDBLite consensus disorder prediction 130 191 - -
Lele27g0815 281 MobiDBLite consensus disorder prediction 130 196 - -
Lele27g0815 281 Pfam Helix-loop-helix DNA-binding domain 192 235 IPR011598 GO:0046983
Lele27g0815 281 FunFam Transcription factor bHLH83 183 242 - -
Lele27g0815 281 Gene3D - 178 242 IPR036638 GO:0046983
Lele27g0815 281 SMART finulus 191 240 IPR011598 GO:0046983
Lele27g0815 281 CDD bHLH_AtIND_like 186 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0815 Lele-ChrLele27 16196886 16198146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0815 33 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 47.148 9.57e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele27g0815 HLH 8.8e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1282 26 8467930 8469817 Lele27g0815 27 16196886 16198146 CCT
Lele27g0814 27 16190551 16193916 Lele27g0815 27 16196886 16198146 CCT
Lele28g1274 28 8506813 8510096 Lele27g0815 27 16196886 16198146 CCT
Lele25g1268 25 8553519 8554788 Lele27g0815 27 16196886 16198146 CCT
Lele27g0815 27 16196886 16198146 Lele25g1267 25 8538303 8541322 CCT
Lele27g0815 27 16196886 16198146 Lele26g1280 26 8443352 8446329 CCT
Lele27g0815 27 16196886 16198146 Lele27g0816 27 16213426 16216468 CCT
Lele27g0815 27 16196886 16198146 Lele28g1272 28 8487867 8490878 CCT
Lele27g0815 27 16196886 16198146 Lele25g1286 25 8689563 8691365 CCT
Lele27g0815 27 16196886 16198146 Lele26g1295 26 8586761 8588554 CCT
Lele27g0815 27 16196886 16198146 Lele27g0800 27 16078070 16079872 CCT
Lele27g0815 27 16196886 16198146 Lele28g1286 28 8625373 8627151 CCT
Lele27g0815 27 16196886 16198146 Lele27g0815 27 16196886 16198146 ECH
Lele25g1268 25 8553519 8554788 Lele27g0815 27 16196886 16198146 hybridization
Lele26g1281 26 8462443 8463664 Lele27g0815 27 16196886 16198146 hybridization