Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0814 ATGGCTGCGCCGGAGCCCATGAATATGCAGAAGCCGAGCTTTACCTTCACAATGCCTCATCCAGCTCAGCCTTATTTTTCACTTTCTTCAGCCCAGCCTCAGCCCTCGGTTCCTGGTCCATCTTCGTTTGCACCTGGACCTGGACCTGGACCTTCTACACCAGCTCCAGCTCAGCTCGCTTCGTCGCAGCCTTCTGCCTCTTAAAGGATCTTTAATCCTATGAATTGTTTATCAATCTCTCCAGGTGTTCCAAATATGTACAAAAATCGGTTACAAGAGTATGCTCAAAGGTCAAACTTACCGCTACCTGTTTATCAAACTGTTATCGAAGGGCTTTCACACGCCCCGAAATTTAGGTCAACTGTGTGGGTTGATGGGAAGTGCTATACTTCCAAGAATGTTTTTTCTGCACGAAAAGCGGCTGAACAAGATGTTGCTAAACTTGCATATGAACATATAACGGCGACAATCAAAGATGAAGGGATTCCCGATATTTTTGAGAAAACTATGTTTTTCAAGTCCATCTTAAATGAATTTGCTGCCAAGATGAATCTGGATAAAGTTACTTACCACACTGTTCAGCAGGAAGGATGTCTTTCTTTTGTATCATCTTTGGTTTTCAATGGTAAATCCTACACTGGTGATCCAGCTAGAACCAAAAAGGAGGCTGAGCAACTGGCTGCACGAACTGCTATTCTTTCAAATCTAAGTAATTCTAGTTCAGGAATGCGTCTTTCTGAGGTAATCAAGTCAAAATTCAGATTTTGTGCTGCACTCAACAATGTGAAGGACTCACAACATACAAGTACTGTTTCGCCCATAGCTAGCTCAGGATATGTGTCTGTTAGTGCAGCTCATGTGACAGTTAATAATAATGAAAATAGTAACAAATTTGAGGTTGCACTTCCTGAGCCCTCTTCTAGAGGGCTTTCACTTCAACAATTATTCCCGACATCAGAACAAGAAAAATTCCCTAAAGATTCCAAACTTTCAAATCAGTCTCAGCAAGCAGGTCAACCACAGCATATTTATGATAGTTCAAGTTCGAAGAAGCGCAAAAGGAACAAGAAAAAGGCAGATGAGAAGTCCCAGATGGATTCTCTGCCGCCAGTCGCTGCATTTCCACTCAACCAAGCCCCTCCTCCTCCTTCTGTTGCATTGCCATTTCCTTCTGGCCAACCTAGTTCAGTGGCGCAGTAA 1200 0.4317 MAAPEPMNMQKPSFTFTMPHPAQPYFSLSSAQPQPSVPGPSSFAPGPGPGPSTPAPAQLASSQPSASXRIFNPMNCLSISPGVPNMYKNRLQEYAQRSNLPLPVYQTVIEGLSHAPKFRSTVWVDGKCYTSKNVFSARKAAEQDVAKLAYEHITATIKDEGIPDIFEKTMFFKSILNEFAAKMNLDKVTYHTVQQEGCLSFVSSLVFNGKSYTGDPARTKKEAEQLAARTAILSNLSNSSSGMRLSEVIKSKFRFCAALNNVKDSQHTSTVSPIASSGYVSVSAAHVTVNNNENSNKFEVALPEPSSRGLSLQQLFPTSEQEKFPKDSKLSNQSQQAGQPQHIYDSSSSKKRKRNKKKADEKSQMDSLPPVAAFPLNQAPPPPSVALPFPSGQPSSVAQ 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0814 399 CDD DSRM_SF 177 232 - -
Lele27g0814 399 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 171 232 IPR014720 -
Lele27g0814 399 SMART DRBM_3 172 236 IPR014720 -
Lele27g0814 399 SMART DRBM_3 87 154 IPR014720 -
Lele27g0814 399 SUPERFAMILY dsRNA-binding domain-like 166 232 - -
Lele27g0814 399 SUPERFAMILY dsRNA-binding domain-like 87 153 - -
Lele27g0814 399 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 86 155 IPR014720 -
Lele27g0814 399 PANTHER RIBONUCLEASE III 65 360 IPR011907 GO:0003723|GO:0004525|GO:0006364
Lele27g0814 399 MobiDBLite consensus disorder prediction 1 64 - -
Lele27g0814 399 MobiDBLite consensus disorder prediction 328 345 - -
Lele27g0814 399 Pfam Double-stranded RNA binding motif 87 152 IPR014720 -
Lele27g0814 399 Pfam Double-stranded RNA binding motif 173 232 IPR014720 -
Lele27g0814 399 Gene3D - 160 239 - -
Lele27g0814 399 MobiDBLite consensus disorder prediction 10 37 - -
Lele27g0814 399 MobiDBLite consensus disorder prediction 374 389 - -
Lele27g0814 399 Gene3D - 84 153 - -
Lele27g0814 399 MobiDBLite consensus disorder prediction 38 54 - -
Lele27g0814 399 MobiDBLite consensus disorder prediction 309 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0814 Lele-ChrLele27 16190551 16193916 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1269 25 8557567 8560869 Lele27g0814 27 16190551 16193916 CCT
Lele27g0814 27 16190551 16193916 Lele25g1268 25 8553519 8554788 CCT
Lele27g0814 27 16190551 16193916 Lele26g1281 26 8462443 8463664 CCT
Lele27g0814 27 16190551 16193916 Lele27g0815 27 16196886 16198146 CCT
Lele27g0814 27 16190551 16193916 Lele28g1273 28 8502357 8503565 CCT
Lele27g0814 27 16190551 16193916 Lele27g0814 27 16190551 16193916 ECH
Lele25g1269 25 8557567 8560869 Lele27g0814 27 16190551 16193916 hybridization
Lele26g1282 26 8467930 8469817 Lele27g0814 27 16190551 16193916 hybridization