Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0802 ATGGCGGACGTCATGGTAATGAATGAAATTGAGGCATCAGCATTACGGATTGGAGTCGATCTTTCCACCATTGACCTGGACTCCATTCGTCTTCCGCCAGGCGATGATTTTGGCTTAGTCAGTGATGATGAAGATATCTACCAGGAGGAAAATCTGGAGTTGGATTCTGGATTTGGCAACATTATAGTTGTGGATAACCTTCCAGTTGTGCCCCGGGAGAAGTTTGAGAAGCTTGAAGGTGTAATACGTAAAATTTTTAGTCAGATTGGTGTGATTAAAGAGGATGGCCTATTTATGCCTGTTGATTCTGATTCTGAGAAAAGTTTGGGTAATTGCTTCATTGAGTACAATACTCCTCAGGAAGCTGAGCTTGCCAAAGAAAAGACACATGGATACAAGTTGGATCGTGCACACGTTTTTTCAGTGGGCATGTTTGATGACTTTGACCGGTTTATGAAAGTTCCAGACCAGTGGGCTCCTCCTGAAACAAAGCCATATGCTCCAGGAGAAAATCTTCAGCATTGGCTTACTGATGCAAAAGCCCGAGACCAGTTCGTGATTCGTGCTGGTTCTGATACTGAGGTTTTATGGAATGATGCAAGGCATTTGAAGCCTGATCCTGTTTACAAGCGTAAATTTTGGACTGAGAGTTTCGTGCAATGGTCCCCACTTGGTACATATTTGGCAACAGTTCACAGGCAGGGAGCAGCCGTTTGGGGAGGTGCTACAAACTTCAATCGTCTTATGCGATATGCTCATCCACAGGTAAAACTCATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACTTATAGTAGCCATGAACCAAGCAATCCTCGTGATGCTAATAGGGTTGTGATAAATATATTTGATGTGAGGCTTGGTAAAGTGATGAGGGATTTCAAAGGAAGTGCAGACGATTTTGCGGTTGGAGGTACTGGGGGTGTTGCAGGGGTGTCATGGCCTGTTTTCAGATGGGGTGGTGGTAGAGATGATAAGTACTTTGCTAGAATGGGGAAAAATATGATCTCTGTATATGAGACAGAGACATTTTCTCTTATTGACAAGAAGTCCTTAAAGGTTGAAAATGTAATGGATTTCAGCTGGTCTCCAACAGATCCTATTCTTGCACTTTTTGTTCCTGAGATGGGTGGTGGAAACCAACCTGCTAGGGTTAGTCTTGTTCAAATCCCTGGTAAAGAGGAACTCAGGCAGAAGAACCTTTTCAGTGTCAGTGATTGCACGATGTACTGGCAAAGCAATGGGGACTACCTTGCTGTTAAGAACACTGGCCGGGTTTCAAAGCTTGCTACTTTGAAAGGCAAGCAGGCAAATGCTCTTTTTTGGTCGCCTGCAGGTCATTACATTGTGCTTGCAGGGTTGAAAGGATTCAATGGACAATTGGAATTTTATAACGTGGATGAGCTTGAAACTATGGCTACTGCTGAACATTTTATGGCAACAGATATTGAATGGGACCCAACAGGAAGGTATGTCGCAACTTCAGTGACTTCCGTCCATGAAATGGAAAATGGTTTCAACATATGGTCTTTCAATGGCAAACTTCTCTATCGTATCTTGAAGGATCACTTCTTTCAGTTCTTATGGCGGCCAAGACCACCATCTTTCTTGAGTCCAGAAAAGGAGGAAGAGATTGCGAGGAACTTGAAGAAGTATAGTAAGAAGTACGAGGCAGAAGACCAAGACGTGTCCCTGCTTCTGAGTGAGCAGGAACGCGAGAAGCGTAGACTGTCGAAGGAAGAGTGGGAAAAGTGGGTGAATCAATGGAAGCAGTTTCATGAAGAAGAAAAGTCAGTGAGGCAAAAGCTTAGAGATGGTGAGGCCAGTGATGAAGAAGAGGAATATGAGGCTAAGGACATTGAAGTTGAAGAAGTGGTGGATGTTTCAGAGGAGGTCCTTCCTTTTGAAGATGAACAACAGTGA 1944 0.4362 MADVMVMNEIEASALRIGVDLSTIDLDSIRLPPGDDFGLVSDDEDIYQEENLELDSGFGNIIVVDNLPVVPREKFEKLEGVIRKIFSQIGVIKEDGLFMPVDSDSEKSLGNCFIEYNTPQEAELAKEKTHGYKLDRAHVFSVGMFDDFDRFMKVPDQWAPPETKPYAPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRKFWTESFVQWSPLGTYLATVHRQGAAVWGGATNFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRLGKVMRDFKGSADDFAVGGTGGVAGVSWPVFRWGGGRDDKYFARMGKNMISVYETETFSLIDKKSLKVENVMDFSWSPTDPILALFVPEMGGGNQPARVSLVQIPGKEELRQKNLFSVSDCTMYWQSNGDYLAVKNTGRVSKLATLKGKQANALFWSPAGHYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFLWRPRPPSFLSPEKEEEIARNLKKYSKKYEAEDQDVSLLLSEQEREKRRLSKEEWEKWVNQWKQFHEEEKSVRQKLRDGEASDEEEEYEAKDIEVEEVVDVSEEVLPFEDEQQ 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0802 647 Pfam Eukaryotic translation initiation factor eIF2A 432 534 IPR013979 -
Lele27g0802 647 MobiDBLite consensus disorder prediction 602 625 - -
Lele27g0802 647 Gene3D - 59 143 IPR012677 -
Lele27g0802 647 PIRSF Transl_init_eIF3b 428 641 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele27g0802 647 PIRSF Transl_init_eIF3b 6 435 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele27g0802 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Lele27g0802 647 SUPERFAMILY RNA-binding domain, RBD 58 136 IPR035979 GO:0003676
Lele27g0802 647 SMART rrm1_1 61 143 IPR000504 GO:0003723
Lele27g0802 647 Gene3D - 210 521 IPR015943 GO:0005515
Lele27g0802 647 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Lele27g0802 647 CDD RRM_eIF3B 59 142 IPR034363 -
Lele27g0802 647 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 49 641 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele27g0802 647 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
Lele27g0802 647 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 40 428 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele27g0802 647 SUPERFAMILY DPP6 N-terminal domain-like 218 532 - -
Lele27g0802 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 135 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0802 Lele-ChrLele27 16099102 16104248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0802 5 640 Eukaryotic Initiation Factors Gene Family AT5G27640 65.021 0.0 954