Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0800 ATGGTGAAGAGAGATTACCCAGATAACAGTGCTATTTGTGGTGGTGGTGGTTTGAAATCTGAATGTTCGTCAATGTCAAGTGGGAAGTTGAAGATGTGGGAAGATGAGCTCGATGCTTCTGGTGGGATGGATGAGTTGCTGGCGGCTTTGGGCTACAAGGTCCGGTCGTCGGACATGGCGGATGTGGCTCAGAAGCTTGAGAAGCTTGAGATGGTTATGGCCACTTCTCAGGAAGATGGGATATCTCATCTTGCTTCTGACACTGTCCACTATGACCCCACCGATCTCCATGGTTGGGTTCAAAGCATGCTCACAGAACTCCACGATGCGCCCAATTTTCTCGATCCGTCGGCGCTGTTGGCGAACCAACAAATTGATGACCCTATTCTAGCTCCGGCCAGCTCCTCCGTCATATCCACCGGGAATTTCTCCAATTCTCAGCCGCAGATTGAGAATCTGTCAACCGTGTACCAAGATGATTCCGAGTACGACCTCCGAGTAATTCCAGGAAAGGCGGCGTTCCCACAAAACAAAACGACAGATAGTGAAAATAGCCATAAGCGATTGAAAACTTCTCCTTCAAACGAATCCGCTCCTTCACCGTCCTCTCCGTTGCCGTCGCCGGCGACTGTACCAGAGCACGCGCGCCCGGTGGTTCTCGTTGACTCCCAAGAAAACGGGGTGCGTCTAGTGCACGCGCTGATGGCATGTGCGGAGGCGGTTCAGCAGAACAATTTGAAGCTGGCGGAAGCACTTGTGGAGCACGTGGGCAGGCTGGCGGCGTCTCAAGCCGGAGCAATGAGGAAGGTGGCATCCTGCTTCGCTCAAGCTTTAGCTCACCGGATTTACGGGATCTCACAACCATCCATCGATTCCGCCTTGTCCGATATGCTCTATATGCATTTCTACGAGTCCTGCCCTTACCTGAAATTCGCTCATTTCACGGCGAACCAGGCCATCCTTGAAGCGTTCGCCACCGCTGACAGAGTTCACGTCATCGATTTCGGGCTCAAGCAGGGGATGCAATGGCCAGCATTAATGCAAGCCCTTGCATTACGACCCGGTGGTCCTCCGACATTCCGCCTCACGGGAATCGGACCCCCGCAACCGGACAACACCGATGCTCTTCAACAAGTGGGATGGAAATTGGCGCAATTGGCCAAAACAATCGGAGTCCAATTCGAATTCCGTGGGTTCGTCTGCAACAGCTTGGTGGATCTCGAGCCGTCTCTCATCGAGATCCGACCCGGAGAAGCAGTTGCGGTTAACTCCGTTTTCGAACTCCACGAGCTACTGGCCCGACCCGGCGCCATCGACAAGGTCTTTAACACGATCAAGGCTGTGAATCCGAAGATCGTGACTGTGGTGGAGCAAGAAGCGAACCACAACGAGCCGGTTTTCTTGGACCGTTTCACAGAAGCACTTCACTACTACTCAACCATGTTTGACTCACTGGAGGGCTCGTCATCCTCGCCGGGGTTAACGCCGGCGGCAAGCCAGGACGTGTTGATGTCGGAGCTATATCTCGGAAGACAGATATGCAACGTGGTGGCGTGCAAAGGGTCAGAGCGAGTGGAGAGGCACGAGACACTGAATCAGTGGAGTGGTCGGATGGGATCGACCGGGTTTGAACCGGTTCACCTGGGTTCAAACGCGTTCAAGCAAGCCAGCATGTTATTGGCAGTGTTCGCCGGAGGAGATGGGTACAGAGTGGAAGAAAACAATGGGTGCCTTCTGCTAGGGTGGCACACACGGCCCCTCATAGCCACGTCGGCTTGGAAAATTCCGGCCGGCGAACTTTAG 1803 0.5402 MVKRDYPDNSAICGGGGLKSECSSMSSGKLKMWEDELDASGGMDELLAALGYKVRSSDMADVAQKLEKLEMVMATSQEDGISHLASDTVHYDPTDLHGWVQSMLTELHDAPNFLDPSALLANQQIDDPILAPASSSVISTGNFSNSQPQIENLSTVYQDDSEYDLRVIPGKAAFPQNKTTDSENSHKRLKTSPSNESAPSPSSPLPSPATVPEHARPVVLVDSQENGVRLVHALMACAEAVQQNNLKLAEALVEHVGRLAASQAGAMRKVASCFAQALAHRIYGISQPSIDSALSDMLYMHFYESCPYLKFAHFTANQAILEAFATADRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAKTIGVQFEFRGFVCNSLVDLEPSLIEIRPGEAVAVNSVFELHELLARPGAIDKVFNTIKAVNPKIVTVVEQEANHNEPVFLDRFTEALHYYSTMFDSLEGSSSSPGLTPAASQDVLMSELYLGRQICNVVACKGSERVERHETLNQWSGRMGSTGFEPVHLGSNAFKQASMLLAVFAGGDGYRVEENNGCLLLGWHTRPLIATSAWKIPAGEL 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0800 600 MobiDBLite consensus disorder prediction 172 211 - -
Lele27g0800 600 Pfam GRAS domain family 230 594 IPR005202 -
Lele27g0800 600 FunFam DELLA protein GAI 42 107 - -
Lele27g0800 600 Gene3D - 42 107 IPR038088 -
Lele27g0800 600 SMART DELLA_2 44 117 - -
Lele27g0800 600 ProSiteProfiles GRAS family profile. 221 594 IPR005202 -
Lele27g0800 600 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 185 590 IPR005202 -
Lele27g0800 600 Coils Coil 59 79 - -
Lele27g0800 600 Pfam Transcriptional regulator DELLA protein N terminal 44 111 IPR021914 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0800 Lele-ChrLele27 16078070 16079872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0800 2 595 GRAS Transcription Factor Family AT2G01570 58.995 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele27g0800 GRAS 1.3e-136 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1296 26 8608679 8613008 Lele27g0800 27 16078070 16079872 CCT
Lele27g0799 27 16054234 16058880 Lele27g0800 27 16078070 16079872 CCT
Lele28g1287 28 8647154 8655466 Lele27g0800 27 16078070 16079872 CCT
Lele25g1286 25 8689563 8691365 Lele27g0800 27 16078070 16079872 CCT
Lele26g1281 26 8462443 8463664 Lele27g0800 27 16078070 16079872 CCT
Lele27g0815 27 16196886 16198146 Lele27g0800 27 16078070 16079872 CCT
Lele28g1273 28 8502357 8503565 Lele27g0800 27 16078070 16079872 CCT
Lele27g0800 27 16078070 16079872 Lele27g0800 27 16078070 16079872 ECH
Lele25g1286 25 8689563 8691365 Lele27g0800 27 16078070 16079872 hybridization
Lele26g1295 26 8586761 8588554 Lele27g0800 27 16078070 16079872 hybridization