Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0786 ATGGCTACTTCCTTGGATATGTCACTTGATGATAGGATAAAAACCAGAAGTAACACCAGGGAGAGGGGTAGAGGGCGTGGCCGAGCCCCCCGTGGCCGTGGAGCAGGCCAGAATCTTGGTGGTGGAAGAATGCCTGGTGCAGCTCGTAGAGCTCCTCTTGGAATTAATTCTCGGCCATCTGCTTATGCCATTGCCAAGTCTATTCGCAGAACCAGGCGTTTTCCGTGGCAGCATGATTTATTCGAAGATAGCCTAAAAGCTGCAGGGATACAAGGAATCGAAGTAGGCACAAAGTTGTATGTTTCCAACTTGGACCATGGAGTAACCAACGAAGATATAAGGGAACTTTTTGCAGAGATTGGAAACTTGAAGCGCTATGCAGTTCACTATGACAGAAATGGACGTCCTAGTGGTTCCGCTGAAGTTGTCTATACTAGAAGGAGTGATGCATTTGCAGCTCTTAAACGATACAATAATGTACTTTTGGATGGAAAGCCCATGAAGATTGAGGTTGTTGGTGCCAATGCAGAATTTCCTGTATCGGCTCGTGTTAATGTTTCTGGGATACATGGGCAGAGGAAGAGGACAGTTGTCATGACGCCTGGAGGTCGAGGAGGTAGAGCTGGAGGTCCTGCTATGTTTAATCGTGGTGCAGGTTGGGGACATCGTGGCGGTGGAAGGAGTGGTAGTGGGAGTATGCGGGGTGGAGGCAGTGGACGAGCTAGGGGTAGGGGCAGGGGCAGGGGCCAGGGCCGTGGTTGGGGGCGGGGGCGTGGGAAGAAGGATGCGGTTGAAAAGTCTGCAGATGATCTTGACAAGGAACTGGAGACTTATCATGCGGAGGCCATGCACATCTCATGA 861 0.5087 MATSLDMSLDDRIKTRSNTRERGRGRGRAPRGRGAGQNLGGGRMPGAARRAPLGINSRPSAYAIAKSIRRTRRFPWQHDLFEDSLKAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFAEIGNLKRYAVHYDRNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEVVGANAEFPVSARVNVSGIHGQRKRTVVMTPGGRGGRAGGPAMFNRGAGWGHRGGGRSGSGSMRGGGSGRARGRGRGRGQGRGWGRGRGKKDAVEKSADDLDKELETYHAEAMHIS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0786 286 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 284 - -
Lele27g0786 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 167 IPR000504 GO:0003723
Lele27g0786 286 MobiDBLite consensus disorder prediction 1 52 - -
Lele27g0786 286 MobiDBLite consensus disorder prediction 255 271 - -
Lele27g0786 286 Gene3D - 93 173 IPR012677 -
Lele27g0786 286 SMART rrm1_1 98 170 IPR000504 GO:0003723
Lele27g0786 286 MobiDBLite consensus disorder prediction 9 25 - -
Lele27g0786 286 CDD RRM_THOC4 97 170 - -
Lele27g0786 286 Coils Coil 261 281 - -
Lele27g0786 286 SMART FoP_duplication_2 210 286 IPR025715 -
Lele27g0786 286 SUPERFAMILY RNA-binding domain, RBD 29 171 IPR035979 GO:0003676
Lele27g0786 286 MobiDBLite consensus disorder prediction 221 271 - -
Lele27g0786 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 174 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0786 Lele-ChrLele27 15969544 15972613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0786 96 234 Eukaryotic Initiation Factors Gene Family AT2G23350 28.814 4.19e-10 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g0786 27 15969544 15972613 Lele25g1300 25 8797088 8797772 CCT
Lele27g0786 27 15969544 15972613 Lele26g1305 26 8763291 8772876 CCT
Lele27g0786 27 15969544 15972613 Lele27g0789 27 15984430 15985114 CCT
Lele27g0786 27 15969544 15972613 Lele28g1295 28 8722835 8723517 CCT
Lele25g1302 25 8807578 8809649 Lele27g0786 27 15969544 15972613 hybridization
Lele26g1306 26 8772907 8775752 Lele27g0786 27 15969544 15972613 hybridization