Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0773 ATGATCACCAGAATTCGTAAAATCTCGAAAAGTTATAATCTTTGGTCTCAATCTTTCTATCCATTATGCTCATCCTCCTCTTACAGCTCCCTTTCGTCCAATTCCTGGTATACTCCACGACGTCTCCGTAAGGACGACGATGACATTTTCTCAACCATCTCTGAAGCTATCGACAATTCCCAAACAGAGCCTCTGGATTCGTCTCTTCGAAGGATTCTCCCTTCACTCAGAGCCCACCATGTCATCAATCTCATTAACTTCAACCCTCATTCTCTTTCCCCTTCTTCTCTCTTCTCCTTCTTCAATTGGCTCGCTTCTCGTCCCCCATTTCGCCACACTGTTCAATCCTACTGCACTATGGCTCACTTCCTCTGCACTCACCGGATGCTCCCTGAAGCTCTATCCCTCATGCGATTCATAGTGTCTTGGAAAGGCAAGGACTCTGCTTCTTTATTGTTTGCGTCTGTTCTTCAAACTAGATGTACCCACCAATCCAATGTTGTATTTGATGTTTTAATTCATGCTTATTTGGATTCTGGATTTGTTGCGGATGCCATTCAATGTTTTCGGTTGGCTAGGACAAATAATCTTCAACTCCCACTTCGTTCTTGTGGTGATCTGCTTGATAAGGCGATGAAGTTGAAATCAGCCGAATCTGCCTGGGCATTCTTTTTGGAAATTTTGGATTCTGGGTATCCTCCAAAAGCTTATAACTTCAATGTTTTGATGCATAGGTTTTGTAAGGAAGGTAATATTAGAGGTGCCCAGTTGGTGTTTGATGAAATGGGGAAGAGACGTTTGCGTCCTACGGTTGTTAGCTTTAACACTTTGATCAATGGGTATTGTAAATCGGGAAACCTAGGCGAGGGATTTAGGTTGAAGAGGGTCATGGAAAATGAAAAGATTTTTCCAGATGTTTTCACTTTCAGTTCTTTGATCAATGGGTTGTGTAAAGAGTGCAGTTTAGACGAGGCAAATAAGCTGTTTGTTGAAATGCTCAAGAGAGGTTTGGTTCCAAATTATGTTACTTTCACCACTTTAATTGATGGGCAATGCAAATATGGGAAAGTTGATTTAGCCATGAAAAATTTCCAGCTAATGCTAGCTAAGGGCATCAAACCTGACTTAGTCACATACAATGCACTGATCAATGGCCTTTGCAGGGTTGGAGATTTGAAAGAGGCTAGGAAGCTTCTGGAAGAGATGAGTGCAACTGGATTGAAGCCTGACAAGATCACTTTCACCACGCTGATAGACGGATTTTATAAGGATGGAGATATTGAACAGGCCTTGGAGATCAAGCAGAGAATGATTGAAGAAAGGATCAAACTTGATGACGTGGCTTTCACCGCACTTATTTCTGGACTCTGTAAAGATGGAAGAGTTCATGATGCAGAAAAAATGTTGAGGGAGATGATGAATTCTGGTTTCAAACCCGATGATGGCGCATTCACTATGGTTATTGATGGTTTTTGTAAGAAGGGTGACACTAAGATGGGATTTAAGCTACTCAAGGAAATGCAAAGGGATGGACATGTTCCAGGAGTTGTGACATATAATGTGCTTATGAATGGACTATGCAAGAAAGGTCAAATGAAAAATGCTAAAATGATGTTAGACGCAATGCTTAATTTGGGGGTAGTTCCAGATGATATTACATTTAACATTTTGCTAGAAGGTCATTGCAAGCATGGAAGTCCTGAAGAAATTGAGCTATTTAGAAGTGAGAAAGGACTTATTACAGATTATGCTTCTTATACTGCACTTCTTAGTGAAGCAAGTAAAGTATCCAAAGATCGCACAAAGAGATGA 1812 0.4084 MITRIRKISKSYNLWSQSFYPLCSSSSYSSLSSNSWYTPRRLRKDDDDIFSTISEAIDNSQTEPLDSSLRRILPSLRAHHVINLINFNPHSLSPSSLFSFFNWLASRPPFRHTVQSYCTMAHFLCTHRMLPEALSLMRFIVSWKGKDSASLLFASVLQTRCTHQSNVVFDVLIHAYLDSGFVADAIQCFRLARTNNLQLPLRSCGDLLDKAMKLKSAESAWAFFLEILDSGYPPKAYNFNVLMHRFCKEGNIRGAQLVFDEMGKRRLRPTVVSFNTLINGYCKSGNLGEGFRLKRVMENEKIFPDVFTFSSLINGLCKECSLDEANKLFVEMLKRGLVPNYVTFTTLIDGQCKYGKVDLAMKNFQLMLAKGIKPDLVTYNALINGLCRVGDLKEARKLLEEMSATGLKPDKITFTTLIDGFYKDGDIEQALEIKQRMIEERIKLDDVAFTALISGLCKDGRVHDAEKMLREMMNSGFKPDDGAFTMVIDGFCKKGDTKMGFKLLKEMQRDGHVPGVVTYNVLMNGLCKKGQMKNAKMMLDAMLNLGVVPDDITFNILLEGHCKHGSPEEIELFRSEKGLITDYASYTALLSEASKVSKDRTKR 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0773 603 Gene3D Tetratricopeptide repeat domain 248 364 IPR011990 GO:0005515
Lele27g0773 603 Pfam PPR repeat 335 367 IPR002885 -
Lele27g0773 603 Pfam PPR repeat 239 266 IPR002885 -
Lele27g0773 603 Pfam PPR repeat family 445 493 IPR002885 -
Lele27g0773 603 Pfam PPR repeat family 374 423 IPR002885 -
Lele27g0773 603 Pfam PPR repeat family 269 318 IPR002885 -
Lele27g0773 603 Pfam PPR repeat family 514 563 IPR002885 -
Lele27g0773 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Lele27g0773 603 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 303 594 - -
Lele27g0773 603 FunFam Pentatricopeptide repeat-containing protein At5g39710 323 429 - -
Lele27g0773 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Lele27g0773 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Lele27g0773 603 TIGRFAM PPR: pentatricopeptide repeat domain 484 515 IPR002885 -
Lele27g0773 603 TIGRFAM PPR: pentatricopeptide repeat domain 377 410 IPR002885 -
Lele27g0773 603 TIGRFAM PPR: pentatricopeptide repeat domain 272 306 IPR002885 -
Lele27g0773 603 TIGRFAM PPR: pentatricopeptide repeat domain 412 445 IPR002885 -
Lele27g0773 603 TIGRFAM PPR: pentatricopeptide repeat domain 517 550 IPR002885 -
Lele27g0773 603 TIGRFAM PPR: pentatricopeptide repeat domain 239 270 IPR002885 -
Lele27g0773 603 TIGRFAM PPR: pentatricopeptide repeat domain 342 375 IPR002885 -
Lele27g0773 603 TIGRFAM PPR: pentatricopeptide repeat domain 307 340 IPR002885 -
Lele27g0773 603 TIGRFAM PPR: pentatricopeptide repeat domain 447 480 IPR002885 -
Lele27g0773 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Lele27g0773 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Lele27g0773 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Lele27g0773 603 Gene3D Tetratricopeptide repeat domain 365 437 IPR011990 GO:0005515
Lele27g0773 603 Gene3D Tetratricopeptide repeat domain 509 579 IPR011990 GO:0005515
Lele27g0773 603 Gene3D Tetratricopeptide repeat domain 438 508 IPR011990 GO:0005515
Lele27g0773 603 Gene3D Tetratricopeptide repeat domain 52 215 IPR011990 GO:0005515
Lele27g0773 603 SUPERFAMILY HCP-like 352 440 - -
Lele27g0773 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Lele27g0773 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Lele27g0773 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0773 Lele-ChrLele27 15803683 15805494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0773 37 592 Glycosyltransferase AT1G05670 31.922 2.06e-93 301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g0773 27 15803683 15805494 Lele25g1330 25 9093551 9097052 CCT
Lele27g0773 27 15803683 15805494 Lele26g1340 26 9060684 9069978 CCT
Lele27g0773 27 15803683 15805494 Lele28g1331 28 9049811 9059106 CCT
Lele25g1315 25 8973583 8975394 Lele27g0773 27 15803683 15805494 hybridization
Lele26g1322 26 8913265 8914708 Lele27g0773 27 15803683 15805494 hybridization