Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele27g0737 | ATGAGAGCATCGTCTGCTTTTTGCTTCTGTGTTCTTTGTTCTTTGTTCCTTGTTCCTTGTTCTCTCTCAATAATCATTCTTCTTCTTCTTTCTGTGGGAGACCCAAGGAAGGTTTCTTATACTGTTTGTTTCGTTGTCTCCCTGCCATTAGTTGCCTCCCTCCCTCTCTCGTTCCATGAAATGGGAGAAGAGGCTTTGACAATATCAATGACAGTCCCCTTTGACAGAGCAGTTGAACAGGCAATTGTATCTATAAAGAAAGGCGCATACTTACTAAAGTGTGGACGCAGAGGGAAGCCGAAGCTCTGCCCATTCAGACTTTCTCAGGATGAGAAAAATTTGATTTGGTACTCCAGACAGCGGGAAAAACACTTGCGCTTGAGTTCGGTCATGAAAATTATTCAAGGACAGGGAAATATAAAGTCCCAAAAGCTAAATCAAAATGGAAACGAGTGCCATTCATTTTCTCTAATTTATGCTAATGGTGAACGCTCACTTGATCTGATATGCAAGGACAAAGCACAGGCTACTTCTTGGTTTGTGGGCTTGAAAGCTGTAATTTCTCAGTCCCAACACCAAAAACCTTTTCGTAGTTTAAGAAGCTGCAAAGGTATACAGAGTTGTGTCAGCAGTCCAGCTGGAATCTTACGAAGAAAGAAAAACCTTGGCCTTCTGGAGGATACTGCTGAATTTACAAAGGTACACAGCGTATGTGCAAGTCCCACTTTGTCACTATCAGAGAGGTGCTTTTCCGATGGCTTATCATATACTTGTGATAGCTTTTATTCATCGGAGTCTTTCCCATCTGATACTCAAAGGGCAGTTGATAATTCAGTTCCAAATTCTCCATACATCGACCCAGATATTCTTAGCAAGAGTAAATCAACATATGTTGATACAGAATATCAGAAGGATTTGCCCTATAGGTATCTTGTTCCTGCTACCTCTCCACGTGTAGCAAATAACAACACATTGAAAGATGTCATGATCTGGGGTGGGGGGATTGTCGGAATTGCAGGGAGTGGCAATGATCAGCTCGTTGACCAACGGGGAGCTCACGTGCTATTGCCAAAGTTACTAGAATCCACCATGATGTTAGACGTAGAAAACATAGCATTAGGAGAAAAACATGCTGCACTTGTTACAAAACAAGGCGAAGTGTTAAGCTGGGGTGAAGGGAAAGGAGGAAGGCTGGGGCTCAAAATTGATATAGATATAAGCTCACCAAAAATTGTTGATTCTCTTAATGGGGTCCATGTAAAGGATGTTGCCTGTGGCGAGTATCACACGTGTGCTTTAATGAATTCTGGCGAAGTATATGCTTGGGGTAATGATGGTTGTGTTGCAGATCAGTTTGGTGAAGGGAAATTCAAAACTCGATGGATACCAAACAAACTCTCTGGTCCTTTAGATGGTATTATTATATCACATGTCACTTGCGGGGAATGGCATACGGCGATTGTCTCGTCTTGTGGACAGCTATTTACATATGGGGATGGTACATTTGGAGCTCTCGGGCATGGGAATTCTCAGAGCATTTGTCAACCAAAAGAAGTTGAATCTCTTAAGGGTCTATGGGTGAGGTCTGTTGCTTGTGGATCATGGCACACAGCAGCAATTGTTGAAGTCATGGTTGACCGGTTTAGGTATAATACTGGTAAGCTGTTTACTTGGGGTGATGGAGAGAAAGGGATGCTTGGCCATGCTGATAACAGGAGGAAGCTTTTGCCAACCTGTGTTTCACAACTTCTGGATTATGACTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTGGCACTTAATAATATGGGCAAAGTTTTCACAATGGGAACTGCAGTGCATGGACAGCTAGGAAATCCGCTTGCCAAGGACAAATCAGTGACAATCGTTGAAGGACTACTTAAACAGGAGTTTGTGAAAGAGATATCCTCGGGTTCATATCATGTTGCTGTCTTGACATCTTCCAGGAGTGTCTATACATGGGGAAAGGGTGCAAATGGACAGCTAGGTTTAGGTGACACCAAAGATAGATACTCGCCGTCTTTTGTAGTGGCTCTAAGAGACTGGCAGGTAGAGAGTATTGCTTGTGGACCGAGCAGCACAGCTGCGATCTGTTTACACAAACCGATTTCTGTTAGTGATCAGTCAGCTTGTAGTGGTTGTAAATTGCCTTTTGGGTTTACAAGGAAGAAGCATAATTGCTATAATTGTGGCCTCCTTTTTTGTCATCCATGTAGTTGTAAAAAGGTTACTAATGCAGCTCTAGCACCGAATAAGAACAAGGCTTTTCGGGTTTGTGACCAATGCTTCAATAAACAGCTTGGAGGTACACCTTCAGTTGTGGCATCAAGGTCTAGAAATTACAACTCACAGAAGCTGCTGAAGAATCAGAACAAGTTCACCGATTTTACAGAAGATAGAGGAGAAACAACAGTGACACAGGGTCCACTGTTGTCTCTCGGTCAATCATGCTACAAAAGAAGCATGACAGGGGGAAGAAAGGACTGGAAAAACCAACAAGAAATCCAGAATGATTTAGAAAATATTTCTTCTGTTTCTGGTGGAGCGCCGAAATGGGGGCAAGTTCCATGCCCTGTCCTGTTTGAAAACTGTACAGAAAATTCTGTTCCATCATTTAGAAGTAAATTAGGTTCTCTTACTTCAGTAAATTTAGAGTCTACTTTATCCAACAATTCGTATGGAGAGAAAGATACAACAAAGTCTGATAATACATTGATAGAAGAAGTTCAGAGGCTGAGAGCTGAGGCTAGAATCCTTGAAGAGCAATGCGAGATAGGAAACCGTAAGTTACAAGAATGTCATAAAAAGATTGAGGAGACTTGGCTCTTGGCAAAGGAGGAGGCTGCAAAGAGCAAGGCAGCAAAAGAGGTCATAAAAGCATTGGTATTAAGGCTGCAAAAGGTAGCAGATAAAACCATAGCTGGAAAAGAAGGAAAGCTTGGGATACAGGAATGTTCGTCAAATTTAACACCCATTCGTACGGATATCAATTCTCCGAGGGATGGCAATGCTGACGGTCTATCGAATTCCCCTATAGTGTTCTTTGACTCATTAAAATCCAGACTTGCCAGAAGTTCAATCCTTAAAAGTGATAGATCAAAGGAGGATTCTCAGTTAACTAAAGCAGAATCTCATGAAGATAGCTCTGAGAGCTTGAAGGTTGAATGGGTAGAACAGTATGAGCCTGGTGTCTACATCACTTTAATTGCCTTGCCATGTGGGCAGAAGGGCCTTAAGAGAGTTAGATTCAGCCGGAAACAATTTTCTGAGAAGGAAGCCGAGAGATGGTGGGACAAGAATCAAGCCACAGTGTATCAGAAGTATGGGATTGAAGGATATATAAAGACAAGCCAAAACTGGGAGAAGGGCTAA | 3396 | 0.4226 | MRASSAFCFCVLCSLFLVPCSLSIIILLLLSVGDPRKVSYTVCFVVSLPLVASLPLSFHEMGEEALTISMTVPFDRAVEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSQDEKNLIWYSRQREKHLRLSSVMKIIQGQGNIKSQKLNQNGNECHSFSLIYANGERSLDLICKDKAQATSWFVGLKAVISQSQHQKPFRSLRSCKGIQSCVSSPAGILRRKKNLGLLEDTAEFTKVHSVCASPTLSLSERCFSDGLSYTCDSFYSSESFPSDTQRAVDNSVPNSPYIDPDILSKSKSTYVDTEYQKDLPYRYLVPATSPRVANNNTLKDVMIWGGGIVGIAGSGNDQLVDQRGAHVLLPKLLESTMMLDVENIALGEKHAALVTKQGEVLSWGEGKGGRLGLKIDIDISSPKIVDSLNGVHVKDVACGEYHTCALMNSGEVYAWGNDGCVADQFGEGKFKTRWIPNKLSGPLDGIIISHVTCGEWHTAIVSSCGQLFTYGDGTFGALGHGNSQSICQPKEVESLKGLWVRSVACGSWHTAAIVEVMVDRFRYNTGKLFTWGDGEKGMLGHADNRRKLLPTCVSQLLDYDFVQVSCGRMLTVALNNMGKVFTMGTAVHGQLGNPLAKDKSVTIVEGLLKQEFVKEISSGSYHVAVLTSSRSVYTWGKGANGQLGLGDTKDRYSPSFVVALRDWQVESIACGPSSTAAICLHKPISVSDQSACSGCKLPFGFTRKKHNCYNCGLLFCHPCSCKKVTNAALAPNKNKAFRVCDQCFNKQLGGTPSVVASRSRNYNSQKLLKNQNKFTDFTEDRGETTVTQGPLLSLGQSCYKRSMTGGRKDWKNQQEIQNDLENISSVSGGAPKWGQVPCPVLFENCTENSVPSFRSKLGSLTSVNLESTLSNNSYGEKDTTKSDNTLIEEVQRLRAEARILEEQCEIGNRKLQECHKKIEETWLLAKEEAAKSKAAKEVIKALVLRLQKVADKTIAGKEGKLGIQECSSNLTPIRTDINSPRDGNADGLSNSPIVFFDSLKSRLARSSILKSDRSKEDSQLTKAESHEDSSESLKVEWVEQYEPGVYITLIALPCGQKGLKRVRFSRKQFSEKEAERWWDKNQATVYQKYGIEGYIKTSQNWEKG | 1131 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele27g0737 | 1131 | Gene3D | - | 449 | 714 | IPR009091 | - | |
| Lele27g0737 | 1131 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 553 | 604 | IPR000408 | - | |
| Lele27g0737 | 1131 | SUPERFAMILY | FYVE/PHD zinc finger | 712 | 781 | IPR011011 | - | |
| Lele27g0737 | 1131 | Gene3D | - | 314 | 448 | IPR009091 | - | |
| Lele27g0737 | 1131 | CDD | PH_PLC_plant-like | 76 | 188 | - | - | |
| Lele27g0737 | 1131 | SMART | fyve_4 | 707 | 776 | IPR000306 | GO:0046872 | |
| Lele27g0737 | 1131 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 659 | 705 | IPR000408 | - | |
| Lele27g0737 | 1131 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 492 | 540 | IPR000408 | - | |
| Lele27g0737 | 1131 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 553 | 601 | IPR000408 | - | |
| Lele27g0737 | 1131 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 385 | 436 | IPR000408 | - | |
| Lele27g0737 | 1131 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 437 | 491 | IPR000408 | - | |
| Lele27g0737 | 1131 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 530 | 540 | IPR000408 | - | |
| Lele27g0737 | 1131 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 605 | 656 | IPR000408 | - | |
| Lele27g0737 | 1131 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 713 | 775 | IPR017455 | - | |
| Lele27g0737 | 1131 | Coils | Coil | 910 | 937 | - | - | |
| Lele27g0737 | 1131 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 420 | 447 | - | - | |
| Lele27g0737 | 1131 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 326 | 384 | IPR000408 | - | |
| Lele27g0737 | 1131 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 657 | 708 | IPR000408 | - | |
| Lele27g0737 | 1131 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 492 | 543 | IPR000408 | - | |
| Lele27g0737 | 1131 | ProSiteProfiles | BRX domain profile. | 1062 | 1117 | IPR013591 | - | |
| Lele27g0737 | 1131 | SUPERFAMILY | PH domain-like | 77 | 187 | - | - | |
| Lele27g0737 | 1131 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1062 | 1116 | IPR013591 | - | |
| Lele27g0737 | 1131 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 715 | 779 | IPR013083 | - | |
| Lele27g0737 | 1131 | Pfam | FYVE zinc finger | 715 | 773 | IPR000306 | GO:0046872 | |
| Lele27g0737 | 1131 | SUPERFAMILY | RCC1/BLIP-II | 326 | 709 | IPR009091 | - | |
| Lele27g0737 | 1131 | Gene3D | - | 77 | 195 | IPR011993 | - | |
| Lele27g0737 | 1131 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 122 | 973 | - | - | |
| Lele27g0737 | 1131 | PRINTS | Chromosome condensation regulator RCC1 signature | 437 | 453 | IPR000408 | - | |
| Lele27g0737 | 1131 | PRINTS | Chromosome condensation regulator RCC1 signature | 494 | 508 | IPR000408 | - | |
| Lele27g0737 | 1131 | PRINTS | Chromosome condensation regulator RCC1 signature | 594 | 612 | IPR000408 | - | |
| Lele27g0737 | 1131 | PRINTS | Chromosome condensation regulator RCC1 signature | 478 | 494 | IPR000408 | - | |
| Lele27g0737 | 1131 | PRINTS | Chromosome condensation regulator RCC1 signature | 652 | 673 | IPR000408 | - | |
| Lele27g0737 | 1131 | PRINTS | Chromosome condensation regulator RCC1 signature | 327 | 343 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele27g0737 | Lele-ChrLele27 | 15491009 | 15502285 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele27g0737 | 1063 | 1121 | Major Intrinsic Protein MIP | AT1G31880 | 44.068 | 9.83e-12 | 66.2 |