Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0682 ATGCTCTTGAAGCTTTATCCTGTCTATGATTTTCAGAACCAAAGCTCACATATTTTCAACAGAAGCGAGGTTCCAAGGCTAGGAAGCATGTTCACAGGATGTGATAGAAACCTCTGGAGGAAGTTCAGGGATAAGCAATGGTGCACTGGTCGGCATAGTGATAGGGCAATTGCCTGTGCTGTTATATTATCTATGCTGGTGTATGAATTTATGCCCAACGGCACACTTAGGGATCACCTTTCTGCTAATTCAAAAGAAGGTCTGAGTTTTGCTCTGAGAATGAGGATTGCACTAGGGTCAGTTAAAGACATTGAAGGAGTTGTGCCATCTCATGTATCTACAGTGGTTAATATTGCATACCAATCTGGTTTGGTATTCTCTGTTATTGATGAACGCATGGGTCTTCAGAGCGCGTTGAGAAATTCTTGGCTTTGTCAAAGTGTTGCCAAGATGAGCCAAATGCTCGACCTAATATGGCGGAAGGGGTTTGAGAGCTCGAAAACATATGATGCTGGTTATGGTTATTCAGGACCTGCGAGATGTTATCGTCAGATAAAGAACAAGCCATACCCGAAATCTCGATTCTGCCGTGGGGTACCTGACCCAAAGATCAGGATTTATGATGTTGGGATGAAAAAGAAAGGGGTTGACGAGTTCCCTTTCTGTGTACATCTTGTATCTTGGGAGAAGGAGAATGTTTCAAGTGAAGCTCTTGAGGCTGCTCGTATAGCATGCACCAAATACATGGCCAAGCATGCAGGGAAAGATGCTTTCCACCTTCGAGTTCGGGTTCATCCTTTCCATGTACTGCGTATCAATAAGATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACAGGGATGAGAGGTGCTTTTGGGAAGCCACTGGGAACTTGTGCTAGAGTCAACATTGGTCAAGTTCTTCTCTCTGTTCGTTGCAGGGACAGCAGCAGCCACCATGCTCAGGAGGCTCTGCGCCGTGCTAAATTCAAGTTCCCCGGTTGCCAGAAGATCATTGTCAGCAGGAAGTGGGGATTCACCAAATTTAGCCGCGCAGACTATCTGAAGTATAAGTCAGAGGGCCGAGTTGTGCCAGATGGAGTCAATGCCAAGCTTCTTGGGTGCCATGGACCTTTGGCCATGCGGCAACCTGGAAGAGCTTTCATGCCAGCTAATGCATAA 1182 0.4619 MLLKLYPVYDFQNQSSHIFNRSEVPRLGSMFTGCDRNLWRKFRDKQWCTGRHSDRAIACAVILSMLVYEFMPNGTLRDHLSANSKEGLSFALRMRIALGSVKDIEGVVPSHVSTVVNIAYQSGLVFSVIDERMGLQSALRNSWLCQSVAKMSQMLDLIWRKGFESSKTYDAGYGYSGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACTKYMAKHAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVNIGQVLLSVRCRDSSSHHAQEALRRAKFKFPGCQKIIVSRKWGFTKFSRADYLKYKSEGRVVPDGVNAKLLGCHGPLAMRQPGRAFMPANA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0682 393 Gene3D Ribosomal protein L10e/L16 176 389 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele27g0682 393 Pfam Ribosomal protein L16p/L10e 185 339 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele27g0682 393 SUPERFAMILY Ribosomal protein L16p/L10e 178 346 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele27g0682 393 TIGRFAM uL16_euk_arch: ribosomal protein uL16 178 347 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lele27g0682 393 CDD Ribosomal_L16_L10e 214 339 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele27g0682 393 PANTHER 60S RIBOSOMAL PROTEIN L10 178 386 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lele27g0682 393 FunFam 60S ribosomal protein L10 175 379 - -
Lele27g0682 393 ProSitePatterns Ribosomal protein L10e signature. 281 302 IPR018255 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0682 Lele-ChrLele27 14813498 14820945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0682 178 393 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 84.722 2.62e-135 384