Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0674 ATGGATCCTGCTCGCTATGGGCTACATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGGTGCGGCTCATGAGTCAAATTACCGGGTTGGTGGTTCATATGACGAGAGGAGGTTTATAGATGAAAGGTACTCAAGGGATAATATATACCAAAGAGGTGCCTTCAATCGTGATGCTTTGGATAGGGAGGCATATCCTCCATCAGGACCAGCTGTTGGCCATTGGAGTGAATCCAAAAGGAGAGGTTATGATGAAGACTATTTGCTGGACAAGGAATCTAGACGTCTTCAGAGGCCTTATTATGATTCATATAATCAGATTGATGCTTTCAGAGATAGGGAGGTTGACACGTATCCAGAATTTGAAAAGTTTCAAGATGGTTATGCCAGCATTGAAAACTATGATGATCGAGGATATGATAAACTTGGTAGGTTTGGGGGACATGATCGTGATGACTATGCATATGATGATTATGGGTATAAGTCTCGTGCATCCCATCATTATAGGGAGGATAGCCATGAGAGGGATATTGATCATGGTCGTCATAGTCATGATTCTGATTATGGGAAGGGTAGAAGAGATAGCAATTGGAGGCGACGTGGATCTCGTGACCGGGAACATGATAGAAGATATCCAAGTAGGGAAAGAGATTTGAGTCCACGTAGGAGGCATGAGCGGTCTCGATCCCGTTCTCGGTCTCGGTCTCAATCTCAATCTCGATCCCACTCTCATTCTCATTCACGTTCTCGTTCCCAATCTCATGGATATGATGATCGTCCAAGATCAAGGTCCCCACGAGGTCTAAGTCATGGTCGAAGTTATCGAGAAGATAACTATGCTGACAGTCGATATGAGAGAAGTGAAAAGCGAAGGGATCGTGAAGAGAAGCGGCGTGAGCATTATTCAGTGGCTCCATCTGCCACTGTTGTTGTAAAAGGTCTTTCACAAAATGCCAATGAAGAAGATCTATACCAGATTCTTGCGGAATGGGGGCCACTTCGGCACGTTCGTGTTATAAAGGAGCGAAATTCTGGCATTTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACGAGCAATGATGGACAAACTTGGAGATGATGGTCTTCTTGTGGATGGTAGAAGGCTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTCCAGGTGGACCTTTTGGTCAAGAGGGATCCATGAAATCAGGCCATAATCATAAAGGCATTACAGTACCGTCTGATTGGATGTGCACTATATGTGGTTACATCAATTTTGCCCGGCGAACATCCTGCTATCAGTGTAATGAACCACGGAGTGAGGATGCTCCTGCAGCAGATATTACATTGTCAAATTCAACAGCCTTAGGAAAGAAAGGATTGGAGGCAGGTCCAACTCATGTATTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTTCGCTATGAGTTCTCCAAACATGCTCCTATTAAGGATCTTCGTCTTGTGAGAGACAAGTTTACTCATGTCTCCAGGGGATTTGCTTTTGTACATTTTTATTCGGTGGAGGATGCCACCAAGGCTCTTGTAGCAACTAATGGAACAACCCTTGAGAAGAATGGACAGATTCTAAGAGTAGCATATGCAAAAAGTATCCTGGGTCCTGGAGCAGGAACGTCAGGTCCTTCCCAGTCAAGTAGTTTAGCAGCTGCTGCTATTGAGGCTGCTACGTTTGCTCAACAGTATGATTCTGTTGGATGGGCCCCTAAAGAATACAACCCTGATGACAAACAATCTACTGGTCAAGAGCAAACTGGTGCAGCACAGACAAATGCATTGGCTCCACAAACAGGCTTTGTTTGGGATGAGGCATCTGGTTATTACTATGATGCTGCTTCAGGGTTTTACTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCTTATGATCACAATAATCAGCAATATATCCCTTGCACTGATCAAACGGAGAGTAAAGCTCCTAGTAATCAGACTGAACCTTCCAAGGTGTCTGACAGTTCCGGCAGTAAAAAAGTGGTTATTTCTGCGCCTGCTACTACTGTTACATCTGCTGAGAAGCCAGCTTCTTTGGCAGATGCAGTCCAGGCTGCTGCAACTGCTGCCATAGCCGCAGAGAAGAAAGAAAAAGAAAAATTGAAGGAGATAAAGCTTGCTTCCAAAAGCAGTATTCTGGCTAACAAAAAGAAAATGAATAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGGGTCAAGCTACTCGTGTAGCTCTAGAAGACAATCACCAATCCACATCCATTGATGATAAGCCTTCTGGAAATCCGACAAAGAGCAAGTTCAAAAATGAGACTACAGATACAAGGGACAATACTTTGTCCACTTCAGGGATTCCCACTGTGCCTGCTTCTCAGGCTGTTGCTTCAGATTCTCAGGTCCAGCCACGGCCTGTTAGTAATAGCCTTGGAGGCACTCTGATGGGGGTTATAAGAGGCTCTGGAAGAGGGATCATTAAATCTGATAGTTCTTACTCAGGACCTATAGCTTCTGCCGCTGCGTGTGCATCAGGCGCATCTTCATCAAATGTAGATGCTCCAACAGTTGCAACTCCCTTTAGAACAGATGTCTCTGCACTGGGTTCTTATGCTACACCTGTCTCTAGTGGAAGTGGCCGGAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAGCCCTCAAGGAACAACCTCAAACTACCTACAGGGATCGTGCAGCTGAGAGAAGAAGTTTGTATAGTTCATCATTGTCAGTTGGGGATGATTTGGCTGATCTGGAATCTGGGGCAATGTCACTGTTCAATCTTTGGAAAATCTACAATAAGAAAGCTGTAAGCTTTGAAGCTCATAGGTTCACTGGTAACTTTACTCAGATGTGTGCATTGACTTGTGAGAAAAAATTTGTTTTTTACCATATGACCTTTGAAGATCGCGATTTTGCATCGAGGAAGGGTGATCCAATGCCTTTCCCTCCTGGGGTTGGTGGGGGACGTGTGGTTGGAGATGCCAACCTTGATACCTACGAGGTGATTACTGCTGACAAAGCAATTGATGAGAACAATGTTGGCAATCGGATGCTCCGCAACATGGGATGGCAAGAAGGCTTGGGTCTAGGTAAGGATGGAAGTGGAATGACAGAGCCTGTCCAGGCACAAAGCACAGAAAGTAGAGCAGGACTTGGAAGTCAGCAGAAAAAGTTGGATCCTAGCCTTGAGGTTCAGGCAGGAGATAGTTACAAGACGCTTATTCACAAGAAAGCACTTGCCAGATTTTGGGAAATGTCATAG 3351 0.4461 MDPARYGLHQGWDNNSALEGYGAAHESNYRVGGSYDERRFIDERYSRDNIYQRGAFNRDALDREAYPPSGPAVGHWSESKRRGYDEDYLLDKESRRLQRPYYDSYNQIDAFRDREVDTYPEFEKFQDGYASIENYDDRGYDKLGRFGGHDRDDYAYDDYGYKSRASHHYREDSHERDIDHGRHSHDSDYGKGRRDSNWRRRGSRDREHDRRYPSRERDLSPRRRHERSRSRSRSRSQSQSRSHSHSHSRSRSQSHGYDDRPRSRSPRGLSHGRSYREDNYADSRYERSEKRRDREEKRREHYSVAPSATVVVKGLSQNANEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAARAMMDKLGDDGLLVDGRRLFFEYSSKPTGGPGGPFGQEGSMKSGHNHKGITVPSDWMCTICGYINFARRTSCYQCNEPRSEDAPAADITLSNSTALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALVATNGTTLEKNGQILRVAYAKSILGPGAGTSGPSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQSTGQEQTGAAQTNALAPQTGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHNNQQYIPCTDQTESKAPSNQTEPSKVSDSSGSKKVVISAPATTVTSAEKPASLADAVQAAATAAIAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNHQSTSIDDKPSGNPTKSKFKNETTDTRDNTLSTSGIPTVPASQAVASDSQVQPRPVSNSLGGTLMGVIRGSGRGIIKSDSSYSGPIASAAACASGASSSNVDAPTVATPFRTDVSALGSYATPVSSGSGRRRFSEMPHSASALKEQPQTTYRDRAAERRSLYSSSLSVGDDLADLESGAMSLFNLWKIYNKKAVSFEAHRFTGNFTQMCALTCEKKFVFYHMTFEDRDFASRKGDPMPFPPGVGGGRVVGDANLDTYEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMTEPVQAQSTESRAGLGSQQKKLDPSLEVQAGDSYKTLIHKKALARFWEMS 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0674 1116 SMART G-patch_5 1038 1084 IPR000467 GO:0003676
Lele27g0674 1116 Pfam G-patch domain 1041 1082 IPR000467 GO:0003676
Lele27g0674 1116 PANTHER RNA-BINDING PROTEIN 204 1112 - -
Lele27g0674 1116 CDD OCRE_SUA_like 612 663 IPR035623 -
Lele27g0674 1116 Pfam OCRE domain 614 662 IPR041591 -
Lele27g0674 1116 ProSitePatterns Zinc finger RanBP2-type signature. 418 437 IPR001876 -
Lele27g0674 1116 Gene3D - 273 413 IPR012677 -
Lele27g0674 1116 Gene3D - 454 607 IPR012677 -
Lele27g0674 1116 SUPERFAMILY RNA-binding domain, RBD 303 406 IPR035979 GO:0003676
Lele27g0674 1116 MobiDBLite consensus disorder prediction 798 830 - -
Lele27g0674 1116 MobiDBLite consensus disorder prediction 1067 1090 - -
Lele27g0674 1116 ProSiteProfiles Zinc finger RanBP2 type profile. 414 443 IPR001876 -
Lele27g0674 1116 MobiDBLite consensus disorder prediction 761 830 - -
Lele27g0674 1116 SMART rrm1_1 309 384 IPR000504 GO:0003723
Lele27g0674 1116 SMART rrm1_1 470 545 IPR000504 GO:0003723
Lele27g0674 1116 Gene3D - 414 444 - -
Lele27g0674 1116 MobiDBLite consensus disorder prediction 165 225 - -
Lele27g0674 1116 CDD RRM1_RRM2_RBM5_like 467 547 - -
Lele27g0674 1116 MobiDBLite consensus disorder prediction 165 302 - -
Lele27g0674 1116 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 471 537 IPR000504 GO:0003723
Lele27g0674 1116 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 369 IPR000504 GO:0003723
Lele27g0674 1116 MobiDBLite consensus disorder prediction 893 924 - -
Lele27g0674 1116 ProSiteProfiles G-patch domain profile. 1040 1086 IPR000467 GO:0003676
Lele27g0674 1116 CDD RRM1_RRM2_RBM5_like 306 386 - -
Lele27g0674 1116 SUPERFAMILY RNA-binding domain, RBD 467 555 IPR035979 GO:0003676
Lele27g0674 1116 MobiDBLite consensus disorder prediction 587 609 - -
Lele27g0674 1116 SUPERFAMILY Ran binding protein zinc finger-like 408 444 IPR036443 -
Lele27g0674 1116 MobiDBLite consensus disorder prediction 664 689 - -
Lele27g0674 1116 MobiDBLite consensus disorder prediction 251 302 - -
Lele27g0674 1116 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 469 549 IPR000504 GO:0003723
Lele27g0674 1116 MobiDBLite consensus disorder prediction 1058 1090 - -
Lele27g0674 1116 SMART zf_4 416 440 IPR001876 -
Lele27g0674 1116 MobiDBLite consensus disorder prediction 226 250 - -
Lele27g0674 1116 MobiDBLite consensus disorder prediction 763 777 - -
Lele27g0674 1116 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 388 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0674 Lele-ChrLele27 14739940 14747642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0674 1019 1085 C2H2 Transcription Factor Family AT5G26610 41.791 2.80e-09 58.2