Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0627 ATGTTGCTCTCCATTATCATCAGCCTTCTGCTCTGCATAGCCTCTCAAACTACCTCGTCAACTAGAGCTGTTGCCATGGCCACCGGGTCAAAGACAGATAGGCTTGCTTTGCTTGCTGTGAGGGATAAGTTAACCAATGGAAATCTAGTCGCTCTGAATTCATGGAATGATTCTGTCCACTTTTGTAAATGGCTGGGTGTTACATGCAGTCTCCGTCACATGAGAGTCTCTGCTTTGAACTTGACATATCAAAATCTGGAGGGCACTCTTGCACCAGAATTAGGAGAGCTCCCTGTAGAGCTGGTTAACTGTTCTAAACTCCAGCAGATTTTATTCACTTCCAATAATTGGACCGGCAAAATTCCCTTCTGGTTTGGATCTATGCAACAACTTACATTGTTGGGAATTGGTCATAATAAATTCCACGGAAATATTCCACCCTCCTTGGGAAATCTTTCATCCTTGGAGCGTTTGTCTCTTTCATATAATAATTTGGAAGGAAGTATACCTCAATCTCTAGGTGGGCTATACTTGCTCTACCTTGGTCGTAACAATCTTTCTGGGATAATCCCTTCTTCACTTTATAATCTTTCTTGCATGGAAGATATAAGTTTCCCTTTCAACTACTTGTCTGGAACTATAGCATCAAATATTGGCCTTGCTTTCCCAAATCTTCGATATTTTAATGTTGGACACAACAAGTTGACAGGAACTATTCCATCTTCGTTATTCAACATCTCTCAATTGCAATTATTTGCAATATACGAAAATGCTTTTAGGGGCCTACTCCCTACTACCTCTTTGGGAAGATTGCAGAACCTTCGTCAATTTGAGATTGACGTAAATAATTTTGGGAGTGAAGAAGGTCATGACCTGGATTTCCTCCCATCATTAGCAAATTGTAGCCAATTGAATTTAATAGAGATGCTAGATAATAAATTTAGCGGTGTATTGCCAAACTCAATTGGAAATCTCTCTTCCCAGCTTGATACGCTTAGCATGGGATATAACCATATCTTTGGAAGCATACCTAATGAGATCAGCGGACTAGATGGCTTAACTTACCTTAGTTTGACAAATAACTTCCTTCAAGGAACAATTCCACATTTGATTGGAAAGCTTGAAAATCTTGGAGAGCTATACCTATACGAAAATCAATTATCTGGTAGAATTCCTGATAATTTTGAAAATCTTACTAAGCTGTTTTATCTTTCCTTGGATAATAACAATCTCAAGGGAACCATTCCTGTAAGCCTCAAACATTGCAAAGGTATGCAATTCTTGTACATAGATCAAAATAACTTGAGCGGTAATATACCAAAGCAAACTTTTGGTAATCTAGAAAGCTTAATACAACTTGACATGTCTTCCAATTCCTTGATTGGTCCCATTCCATCTGTGATTGGTAATATGAAGCATTTAGTGGAATTAAATCTCAGTAAAAACAATTTTTCTGGTGATATTCCAAAGAAACTTGGGGAATGCTTACAGTTGACAGATCTTGATATGAGTGGGAACTTTCTCCATGGAAGTATCCCCTCATCCTTTAACTTTGGATTAGCTAGGCTTCTCCACGAGGTTATAAGAAATTCTGGGGAGGGTCAAACTACATCCTCAGCAATTAAGGGAACTATTGGGTATATTCCTCCAGAGTATGGACAAAGTGGCCAAGTTACAACACAAGGGGATATCTACAGCTATGGGGTTCTTATGCTAGAGATGCTCACCGGAAAGAAGCCAACAGATAGCATGTTTCATGAGGATTTAAGCCTTCCCAAATTCTGCAAGTTAGCATTGCCAGACAGAGTCATTGATATAGTGGATTCAAGTCTGCTTGTTCTATCTGATAGAGATCAAAGGAAGGCTATGCAAAATTCAGAGATGGAACAGAAAATTCAAGAGTCTCTAGTTGGCTTTGCTAGGATTGGAGTAGCATGTTGTCCAGAATTGCCAAGTGAACGAATGGGGATAAAAGATGTTTTAGCAAATTTGCTTGCAATTAAGCAAAAGGTATCGACATTCAATATTGTCAAATAA 2037 0.3878 MLLSIIISLLLCIASQTTSSTRAVAMATGSKTDRLALLAVRDKLTNGNLVALNSWNDSVHFCKWLGVTCSLRHMRVSALNLTYQNLEGTLAPELGELPVELVNCSKLQQILFTSNNWTGKIPFWFGSMQQLTLLGIGHNKFHGNIPPSLGNLSSLERLSLSYNNLEGSIPQSLGGLYLLYLGRNNLSGIIPSSLYNLSCMEDISFPFNYLSGTIASNIGLAFPNLRYFNVGHNKLTGTIPSSLFNISQLQLFAIYENAFRGLLPTTSLGRLQNLRQFEIDVNNFGSEEGHDLDFLPSLANCSQLNLIEMLDNKFSGVLPNSIGNLSSQLDTLSMGYNHIFGSIPNEISGLDGLTYLSLTNNFLQGTIPHLIGKLENLGELYLYENQLSGRIPDNFENLTKLFYLSLDNNNLKGTIPVSLKHCKGMQFLYIDQNNLSGNIPKQTFGNLESLIQLDMSSNSLIGPIPSVIGNMKHLVELNLSKNNFSGDIPKKLGECLQLTDLDMSGNFLHGSIPSSFNFGLARLLHEVIRNSGEGQTTSSAIKGTIGYIPPEYGQSGQVTTQGDIYSYGVLMLEMLTGKKPTDSMFHEDLSLPKFCKLALPDRVIDIVDSSLLVLSDRDQRKAMQNSEMEQKIQESLVGFARIGVACCPELPSERMGIKDVLANLLAIKQKVSTFNIVK 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0627 678 Pfam Protein kinase domain 518 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g0627 678 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 517 665 - -
Lele27g0627 678 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 67 292 - -
Lele27g0627 678 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 293 539 - -
Lele27g0627 678 Pfam Leucine Rich Repeat 154 176 IPR001611 GO:0005515
Lele27g0627 678 SMART LRR_typ_2 471 495 IPR003591 -
Lele27g0627 678 SMART LRR_typ_2 398 422 IPR003591 -
Lele27g0627 678 SMART LRR_typ_2 152 176 IPR003591 -
Lele27g0627 678 SMART LRR_typ_2 222 246 IPR003591 -
Lele27g0627 678 SMART LRR_typ_2 374 397 IPR003591 -
Lele27g0627 678 Gene3D Ribonuclease Inhibitor 178 289 IPR032675 -
Lele27g0627 678 Gene3D Ribonuclease Inhibitor 29 177 IPR032675 -
Lele27g0627 678 ProSiteProfiles Protein kinase domain profile. 340 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g0627 678 SUPERFAMILY Protein kinase-like (PK-like) 517 662 IPR011009 -
Lele27g0627 678 Pfam Leucine rich repeat 352 411 IPR001611 GO:0005515
Lele27g0627 678 Pfam Leucine rich repeat 428 484 IPR001611 GO:0005515
Lele27g0627 678 Gene3D Ribonuclease Inhibitor 290 511 IPR032675 -
Lele27g0627 678 Gene3D Transferase(Phosphotransferase) domain 1 512 676 - -
Lele27g0627 678 SUPERFAMILY RNI-like 112 516 - -
Lele27g0627 678 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0627 Lele-ChrLele27 14222782 14226052 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0627 517 670 Receptor kinase-like Gene Family AT3G47570 38.961 4.43e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lele27g0627 Pkinase 7.4e-08 CL0016