Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0597 ATGTTTGGGCCATTCTTTCTAACGAACCGATTCACAATGTTCCCTGTATTATACAAGGATAGTACCTCTCACTACACTGGGAAGGCTGAGGGAAAGCAGAATCAACGAAGCGCTTCTTCAATGGCTATTTCTTCCATATCTTCTTCGTCATTAGTTCCTTCTATTTCACTCATCTCATCTTCTTCCCTGAATTCTAAAGCAAACTTCTCCTTCTCCTTCTTCCACGCTGGTACTAACACCTTTAAGCTTCAAAGATCAAAGCCTCTGCTATCATCAACTAGGGTTTATGCTGCTCCCGAAGTGTTGGATTTCCCAGATTCCGCTGAAGTTCCTCCACTAACCCCAGATGACTCCGACTCCACCACCATTGAGGTTGGAGACTTGGGGACTCCAAGCACCTCGTCTCTTAGCATTGGTGGAGATGCAGATGCGATGGCACCAAAGCAGAAAATTAGAATCAAACTGAGATCTTATTGGGTTCCCCTGATAGAGGATTCATGCAAGCAGATAATGGATGCAGCAAAAAGTACCAATGCAAAAACCATGGGTCCTGTACCATTACCAACTAAGAAAAGAATCCACTGTGTTCTTAAATCTCCACATGTGAACAAGGATGCCCGGTTCCATTTCGAGATAAGAACCCATCAGCGTCTCATTGATATTCTATATCCCACTGCCGAAACAATAGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTTGATGTGGAGGACTCTAGAGAAGAGGGGCATCATTTCCAAATTAGCATTGAAGTGTAA 780 0.4359 MFGPFFLTNRFTMFPVLYKDSTSHYTGKAEGKQNQRSASSMAISSISSSSLVPSISLISSSSLNSKANFSFSFFHAGTNTFKLQRSKPLLSSTRVYAAPEVLDFPDSAEVPPLTPDDSDSTTIEVGDLGTPSTSSLSIGGDADAMAPKQKIRIKLRSYWVPLIEDSCKQIMDAAKSTNAKTMGPVPLPTKKRIHCVLKSPHVNKDARFHFEIRTHQRLIDILYPTAETIDSLMQLDLPAGVDVEDSREEGHHFQISIEV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0597 259 SUPERFAMILY Ribosomal protein S10 150 244 IPR036838 -
Lele27g0597 259 TIGRFAM rpsJ_bact: ribosomal protein uS10 149 244 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele27g0597 259 Gene3D Ribosomal protein S10 domain 140 246 IPR036838 -
Lele27g0597 259 SMART Ribosomal_S10_2 152 246 IPR027486 -
Lele27g0597 259 FunFam 30S ribosomal protein S10 148 247 - -
Lele27g0597 259 Pfam Ribosomal protein S10p/S20e 152 244 IPR027486 -
Lele27g0597 259 MobiDBLite consensus disorder prediction 114 139 - -
Lele27g0597 259 ProSitePatterns Ribosomal protein S10 signature. 174 189 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele27g0597 259 MobiDBLite consensus disorder prediction 107 141 - -
Lele27g0597 259 Hamap 30S ribosomal protein S10 [rpsJ]. 148 247 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele27g0597 259 PRINTS Ribosomal protein S10 family signature 206 220 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele27g0597 259 PRINTS Ribosomal protein S10 family signature 150 163 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele27g0597 259 PRINTS Ribosomal protein S10 family signature 185 200 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele27g0597 259 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 93 244 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0597 Lele-ChrLele27 13914523 13917508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0597 150 244 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 32.292 7.59e-08 48.1