Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0539 ATGAGGAAAGGCAGAGCAGCCGCACCGGTGAAGACGGCAGCGGCGGCGGTGGCAGCAGCTGGGGTTGACGGAGGATCCGGATCGAGGACGGTTTTAAAAGAGCCGAGGTACCGGGGCGTGAGGAAGAGGCCGTGGGGTAAATTTGCTGCGGAGATCAGAGACCCTGTGAAGAAAGCTCGTGTGTGGCTTGGCACCTTCGATTCCGCCGAAGAAGCCGCTAAAGCTTACGACGCCGCCGCTCTCAGCCTCCGTGGACCTAAGGCTAAGACCAACTTTCCGATCATCCCTTCTTCTCTCTCACCTTTCTGTTACCACCACAACAATAACAACCCCACCGATCCGTTTTTAGATCACAGGTTGTATGCTTCTAATGGCTTCCAGGAGCACCAGATCAATCCTCAGAGACCTACTTCTAGCGGCATGAGCAGCACCGTCGAGTCCTTTAGCGGCCCTCGCCCCCGCTCGATTGCGCCGCCGTTGACCACCATCACAACGTCCCGGAGATACCCTCGGACGCCGCCAGTCGTGCCAGAGGATTGCCACAGCGACTGCGATTCATCGTCGTCTGTGGTTGACAACGACGGCGATGATATCGCGTCATCCTCTTTCCGGCGGCCTTTCCCGTTCGATCTTAACTTCCCACCGGTCGATGACGATCTTCACTGCACCGATCTGCGTCTCTGA 684 0.576 MRKGRAAAPVKTAAAAVAAAGVDGGSGSRTVLKEPRYRGVRKRPWGKFAAEIRDPVKKARVWLGTFDSAEEAAKAYDAAALSLRGPKAKTNFPIIPSSLSPFCYHHNNNNPTDPFLDHRLYASNGFQEHQINPQRPTSSGMSSTVESFSGPRPRSIAPPLTTITTSRRYPRTPPVVPEDCHSDCDSSSSVVDNDGDDIASSSFRRPFPFDLNFPPVDDDLHCTDLRL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0539 227 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Lele27g0539 227 CDD AP2 35 94 IPR001471 GO:0003700|GO:0006355
Lele27g0539 227 FunFam Ethylene-responsive transcription factor 2 36 94 - -
Lele27g0539 227 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 26 195 - -
Lele27g0539 227 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Lele27g0539 227 MobiDBLite consensus disorder prediction 129 150 - -
Lele27g0539 227 Pfam AP2 domain 35 85 IPR001471 GO:0003700|GO:0006355
Lele27g0539 227 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Lele27g0539 227 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Lele27g0539 227 MobiDBLite consensus disorder prediction 129 199 - -
Lele27g0539 227 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Lele27g0539 227 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Lele27g0539 227 MobiDBLite consensus disorder prediction 182 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0539 Lele-ChrLele27 12840483 12841166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0539 1 227 AP2-EREBP Transcription Factor Family AT3G20310 58.527 6.29e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele27g0539 AP2 1.2e-15 CL0081