Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0478 ATGGCGTCATCGTCGAGCAGTGGATTGACATTCAAGCTACATCCTTTGGTGATAGTCAACATATCGGATCATTATACTCGGGTTAAGTCACAGATGATCCCGCCCATTGCATCCCATCAGAGAAGTACCACCTCCGCTAACACTAATGCTGCTGAAGGAATGGTTTCCCTGTCTCATAGGGTATACGGATGCGTTATTGGAGTACAGAGAGGACGTACCGTAGAGATCTTCAATAGCTTCGAACTTCTTTACGACCCTTCTACCCATTCCCTCGATCGTTCTTTTCTTGAGAAGAAGCAAGAGCTCTACAAGAAAGTTTTCCCCCACTTCTACATACTAGGATGGTATTCAACTGGGAGCGATGCCCAGGAGTCAGATATGCATATTCACAAAGCTTTGATGGATATCAATGAAAGTCCAGTGTATGTACTTCTTAATCCTTCAATCAATCTTGCTCAGAAGGATCTCCCTGTCAGTATTTTTGAAAGTGAACTGCATGTAATAGACGGGATTCCACAACTGATCTTTGTTCGTTCAAGCTACACTATTGAGACTGTTGAAGCAGAACGGATTTCAGTTGATCATGTTGCGCATCTTAAGCCATCAGATGGTGGTTCAGCCGCAACGCAATTAGCTGCTCACCTTACTGGTATACACAGTGCTATTAAAATGCTGCATAGCAGAATTAAGGTGCTGCATCATTATCTTCTTGCAATGCAGAAAGGTGAAGTCCCTTGCGACAATTCTCTGCTAAGACAAGTATCAAGTCTCCTGAGAAGATTGCCAGCGATTGAATCTGGGAAATTCCAAGATGATTTCTTGATGGAATACAATGATACCTTATTGATTACTTACCTTGCTATGATGACTAACTGCTCAAGCGCAATGAACGAACTGGTCGACAAATTCAATACTGCATACGACAGGCATAGCAGAAGGGGCGGACGAACTGCCTTTATATGA 963 0.4309 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMIPPIASHQRSTTSANTNAAEGMVSLSHRVYGCVIGVQRGRTVEIFNSFELLYDPSTHSLDRSFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINLAQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGEVPCDNSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLITYLAMMTNCSSAMNELVDKFNTAYDRHSRRGGRTAFI 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0478 320 ProSiteProfiles MPN domain profile. 36 167 IPR037518 -
Lele27g0478 320 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 139 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele27g0478 320 FunFam COP9 signalosome subunit 6 1 201 - -
Lele27g0478 320 CDD MPN_CSN6 9 316 IPR033859 GO:0000338|GO:0008180
Lele27g0478 320 Gene3D Cytidine Deaminase, domain 2 1 201 - -
Lele27g0478 320 Pfam Maintenance of mitochondrial structure and function 187 301 IPR024969 -
Lele27g0478 320 SMART pad1_6 10 166 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele27g0478 320 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 3 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0478 Lele-ChrLele27 5984770 5992545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0478 2 271 Eukaryotic Initiation Factors Gene Family AT2G39990 22.545 7.90e-10 57.0