Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0467 ATGTCCGTACAATTTTCCATTGTGAACCGGCCTGCGTCTGATCAAAGTACCTCTTTTGAGTTTGAGGATGATCCATTATTATGCAAAACAAGTCGAAGAAGAAGAATCCATCAAAAGATCCTCAGAATTATACTCACAGACCATGATGCTACAGATTCCGACACTTGCAGTGATGAAGATGAAGAGATACCTCGGACACTTCGAAGATTTAAGAAGCATATCACAGAGATTACTATGGATCTTCCCTCTACTCGTCAGTCAACTTCCTCCTCTTCACTTGCTTGTTTCGCGAAACACGACCACCGTACTTTCTTGAAGAGACCTAAAAAATCTCCGACTCGTTGCCACAACAAGTACAGGGGTGTTCGCCAGAGGCCGTGGGGGCGGTGGGCCGCCGAGATCCGAGACCCGACCCGCCGGAAACGATTGTGGCTGGGAACCTTTGACACCGCGGAGGAAGCCGCCAGCGAGTACGACAAGGCTGCGATCATGCTCAAGGGTGCTAACGCCGTCACGAACTTCCCTAATTCTGTTGTGACGGACAAAGAAACAAGGCGGGTAACCGTGGACACCCCACCGAGCACCACCGAGGGATTCGCCTCATCCATGGAGTCTCCGACGTCTGTGCTGGCCTACGACAGTGATTATTCTACGGCGGCGTTCGAGGGTTTCTGCTACCGGGATGCGCTGGGTTTCGATATTGAGATGCCGTTGACGGACATTAATGTGGTGGGTTTCGGTCAGACGAAGTCGCCGGAGACTGAAGAATTCGAAGACTTTGACGTGGACGAGTTCTTGACGTGGCCTAGCTAA 813 0.5117 MSVQFSIVNRPASDQSTSFEFEDDPLLCKTSRRRRIHQKILRIILTDHDATDSDTCSDEDEEIPRTLRRFKKHITEITMDLPSTRQSTSSSSLACFAKHDHRTFLKRPKKSPTRCHNKYRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAASEYDKAAIMLKGANAVTNFPNSVVTDKETRRVTVDTPPSTTEGFASSMESPTSVLAYDSDYSTAAFEGFCYRDALGFDIEMPLTDINVVGFGQTKSPETEEFEDFDVDEFLTWPS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0467 270 SUPERFAMILY DNA-binding domain 118 177 IPR016177 GO:0003677
Lele27g0467 270 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Lele27g0467 270 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Lele27g0467 270 Gene3D AP2/ERF domain 117 177 IPR036955 GO:0003700|GO:0006355
Lele27g0467 270 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 38 214 - -
Lele27g0467 270 FunFam Ethylene-responsive transcription factor 2 117 176 - -
Lele27g0467 270 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Lele27g0467 270 PIRSF PTI6 14 270 IPR017392 GO:0003700
Lele27g0467 270 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Lele27g0467 270 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Lele27g0467 270 CDD AP2 118 177 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0467 Lele-ChrLele27 5808860 5809672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0467 39 212 AP2-EREBP Transcription Factor Family AT4G27950 43.243 8.66e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele27g0467 AP2 5e-15 CL0081