Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0460 ATGACTTCAAGTAACCGATGCCACTATGAAGTCCTTGGCCTCCAGCAAGACTGTACTCCTGATGAAATACGGTCAGCATATAGGCGCCTCGCCCTTCAGCGCCACCCTGACAAGCTTGTCAAATCTGGCTTATCACAAGCTGAAGCCACAGCTCAATTCCAGGAGCTCCAACATGCCTATGAAGTCCTTTCTGACCCCAAAGAGCGTGCATGGTATGATTCCCACCGGTCTCAGATTCTCTTTTCTGATCCAAACTCAGTTGGAAACTCAGCCCCCAACTCGTTCATCCCGAACCTGTTTTCCTTCTTCTCTACGAATGCTTATTCTGGATATTTGGACACTGGCAAGGGATTCTACAAGGTTTATTCTGATGTTTTTGATAAAATTCATGCCAATGAAATTAACTTTGCTAGGACATTAGGACTAGGTATTGATGTGGTTCGACAAGCCCCAGTAATGGGCAATTTAGATAGCCCTTATGCTCAAGTGACAGCATTTTACAATTACTGGTTGGGATTTTCAACAGTTATGGATTTTTGTTGGGTGGATGAGTATAATGTTATGGCTGGTCCTAACCGGAAGTCAAGGCGTCTTATGGAGGAAGAGAACAGCAAAATCAGAAAGAAGGCAAAGAAAGAGTACAATGACACAGTGCGGAAGTTGGCTGAGTTTGTCAAGAAGAGGGATAAAAGGGTGATTGATATGAAGATGAAGAAGAATATGGAGATGGAAAAGATGAAAGAGGAGGAGAGGGAGAGGAAGAGGCAGTTGGAGAAGGAGAAAAAGGAGAGAGCAATGTCATATGAAGAGCCTGAATGGGCCAAAGTGGAGGAGGATGAAGAAGATGAGGCTGATTGGTTTGAGGAGGGGAGTAAGAAGAAGAATGCTGAGAATGAGTTTTATTGTGTACTGTGTGGCAAGAAGTTCAAGAGTGAGAAGCAATGGAAGAACCATGAGCAATCAAAGAAGCATAAGGAGAAAGTTGCCGAATTTAGGGATTCACTTGATAATGAAGAGGATGCAGAAGTAGAGGGGGAAGAAAGAAAAGGAAAGGCGAGCTCAGAAAGTTATGAAGACAAAATTGGGGTGGATGAGGATATATCTGGGAGCACTGATAATGAGATTGATGATTTAGAAGGGAGAATTAGAGATGATCTTAATGTTGCAGAGGCAACAAGAAACGGGGCTGAGTTGAATGAAGACGAGGAAGAAGAATTTCTTGATGCCTGGCATCCAGAAGGGGATTTTGATGTAGAAGAACATGATGATGAATTTGGTGTCCTTGAAGCAATGCTGGCTGGGCACAGGAGCAGAAAAACTGGTGCCCCAAGCCCGGAGCACAAGGATTCGGTGCGTACATCTCAAAATGATACTGAGAGCGATGAGGTTGGTTTTATGGAATATGACAACCGAAAGAATTCTAGAAAGAAACGTGGAGCTAAAAAAGAGAAAGGAAGAAAAAATAATGAAGAATTGAAGGTGACTAGGAACAGTGGTTTTCAGAATGAAGAAAGCATTAACGGTGATGCATCTCAGGCAGAAGACTCTTCTTCATATACTGTGGAAAACGAGAATAATAGTACAGAAAATGAGCAGGTCAGTAGAGATAAAAAGACTTCAAATCAACGTATTAATAAAAAAGGAGCTGCAAAGGACACGATAACCAATGGAAAAAATTCCTCCAAAACAAGAAAAGCCAAGGGTACATCAAAGAATCTTGGCAATTTCTGTGAGGCTTGCGGTGAGGAGTTTGATTCAAGGAACAAATTGCATAAACATCTGGGGGAAACCGGGCATGCGACAATAAAATCCACAAGGAGGCATCACTAG 1830 0.4257 MTSSNRCHYEVLGLQQDCTPDEIRSAYRRLALQRHPDKLVKSGLSQAEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSVGNSAPNSFIPNLFSFFSTNAYSGYLDTGKGFYKVYSDVFDKIHANEINFARTLGLGIDVVRQAPVMGNLDSPYAQVTAFYNYWLGFSTVMDFCWVDEYNVMAGPNRKSRRLMEEENSKIRKKAKKEYNDTVRKLAEFVKKRDKRVIDMKMKKNMEMEKMKEEERERKRQLEKEKKERAMSYEEPEWAKVEEDEEDEADWFEEGSKKKNAENEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSLDNEEDAEVEGEERKGKASSESYEDKIGVDEDISGSTDNEIDDLEGRIRDDLNVAEATRNGAELNEDEEEEFLDAWHPEGDFDVEEHDDEFGVLEAMLAGHRSRKTGAPSPEHKDSVRTSQNDTESDEVGFMEYDNRKNSRKKRGAKKEKGRKNNEELKVTRNSGFQNEESINGDASQAEDSSSYTVENENNSTENEQVSRDKKTSNQRINKKGAAKDTITNGKNSSKTRKAKGTSKNLGNFCEACGEEFDSRNKLHKHLGETGHATIKSTRRHH 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0460 609 ProSiteProfiles Zinc finger C2H2 type domain profile. 575 604 IPR013087 -
Lele27g0460 609 MobiDBLite consensus disorder prediction 312 381 - -
Lele27g0460 609 Coils Coil 321 341 - -
Lele27g0460 609 CDD DnaJ 7 65 IPR001623 -
Lele27g0460 609 ProSitePatterns Zinc finger C2H2 type domain signature. 577 599 IPR013087 -
Lele27g0460 609 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Lele27g0460 609 MobiDBLite consensus disorder prediction 494 528 - -
Lele27g0460 609 MobiDBLite consensus disorder prediction 243 272 - -
Lele27g0460 609 SMART ZnF_U1_5 297 331 IPR003604 GO:0003676|GO:0008270
Lele27g0460 609 Gene3D Classic Zinc Finger 288 351 - -
Lele27g0460 609 PRINTS DnaJ domain signature 9 27 IPR001623 -
Lele27g0460 609 PRINTS DnaJ domain signature 48 68 IPR001623 -
Lele27g0460 609 PRINTS DnaJ domain signature 27 42 IPR001623 -
Lele27g0460 609 MobiDBLite consensus disorder prediction 440 456 - -
Lele27g0460 609 SUPERFAMILY Chaperone J-domain 4 77 IPR036869 -
Lele27g0460 609 MobiDBLite consensus disorder prediction 243 290 - -
Lele27g0460 609 Pfam DnaJ domain 8 73 IPR001623 -
Lele27g0460 609 SMART c2h2final6 575 599 IPR013087 -
Lele27g0460 609 SMART c2h2final6 300 324 IPR013087 -
Lele27g0460 609 Coils Coil 233 267 - -
Lele27g0460 609 Gene3D DnaJ domain 1 87 IPR036869 -
Lele27g0460 609 MobiDBLite consensus disorder prediction 312 334 - -
Lele27g0460 609 MobiDBLite consensus disorder prediction 529 545 - -
Lele27g0460 609 MobiDBLite consensus disorder prediction 546 570 - -
Lele27g0460 609 Pfam Zinc-finger double-stranded RNA-binding 300 325 IPR022755 -
Lele27g0460 609 SMART dnaj_3 6 68 IPR001623 -
Lele27g0460 609 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 329 IPR013087 -
Lele27g0460 609 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 2 604 IPR044648 -
Lele27g0460 609 MobiDBLite consensus disorder prediction 432 573 - -
Lele27g0460 609 SUPERFAMILY beta-beta-alpha zinc fingers 294 342 IPR036236 -
Lele27g0460 609 MobiDBLite consensus disorder prediction 344 367 - -
Lele27g0460 609 ProSitePatterns Zinc finger C2H2 type domain signature. 302 324 IPR013087 -
Lele27g0460 609 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0460 Lele-ChrLele27 5621085 5623692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0460 3 604 C2H2 Transcription Factor Family AT1G74250 50.696 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele27g0460 DnaJ 8.2e-22 CL0392