Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0458 ATGGCTCCCCTCCCATTTTTCACCCCTTTCCTTCTTTTCTTCATCAACCTCCACCTCATCCACCACACCATCGCCAACTATGGCAGTTGGCAGAGTGCTCATGCTACTTTTTACGGCGGCGGTGATGCATCTGGTACTATGGGAGGTGCGTGTGGTTATGGAAATTTGTACAATCAAGGTTATGGAACTAATACCGCAGCTCTAAGCACCGCCTTGTTCAATAATGGCTTAACTTGCGGGGCTTGTTATGAGATTAGCTGCTCCGACGATCCACGGTGGTGCAAGCCCGGCTCCGTCACTATCACATCCACAAACTTCTGTCCTCCGAACTTGGCTCTTCCCAACAACAACGGCGGATGGTGCAACCCTCCTCTCCAACACTTTGACATGGCAGAAGCAGCCTTCCTCCAAATCGCTCAGTACAAAGCAGGAATCGTACCAAAGGGAGGAATAAGATTCACAATTAATGGGCATTCCTACTTCATTTTGGTGCTGATAAGCAACGTAGGAGGATCTGGGGATGTTCATGCAGTGTCAATTAAAGGCTCAAGAACTGGTTGGCAAGCTTTGTCGAGGAACTGGGGGCAAAATTGGCAAAGCAATTCTTATCTCAATGGCCAATCTCTCTCTTTCAAGGTCACCACTAGCGATGGCGCAACTTTGAACAGCTTCAACGTGGCACCGTCTAATTGGCAGTTTGGGCAGACCTTTCAAGGGCGTCAATTTTAG 729 0.487 MAPLPFFTPFLLFFINLHLIHHTIANYGSWQSAHATFYGGGDASGTMGGACGYGNLYNQGYGTNTAALSTALFNNGLTCGACYEISCSDDPRWCKPGSVTITSTNFCPPNLALPNNNGGWCNPPLQHFDMAEAAFLQIAQYKAGIVPKGGIRFTINGHSYFILVLISNVGGSGDVHAVSIKGSRTGWQALSRNWGQNWQSNSYLNGQSLSFKVTTSDGATLNSFNVAPSNWQFGQTFQGRQF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0458 242 SUPERFAMILY Barwin-like endoglucanases 29 168 IPR036908 -
Lele27g0458 242 FunFam Expansin 20 154 - -
Lele27g0458 242 Gene3D - 18 151 IPR036908 -
Lele27g0458 242 PRINTS Expansin signature 196 217 IPR002963 GO:0009664
Lele27g0458 242 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Lele27g0458 242 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Lele27g0458 242 PRINTS Expansin signature 161 182 IPR002963 GO:0009664
Lele27g0458 242 PRINTS Expansin signature 225 241 IPR002963 GO:0009664
Lele27g0458 242 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Lele27g0458 242 PRINTS Expansin signature 149 161 IPR002963 GO:0009664
Lele27g0458 242 SMART dpbb_1 65 153 IPR007112 -
Lele27g0458 242 FunFam Expansin 150 242 - -
Lele27g0458 242 Gene3D - 152 242 IPR036749 -
Lele27g0458 242 PANTHER EXPANSIN-A15 12 242 IPR002963 GO:0009664
Lele27g0458 242 Pfam Lytic transglycolase 65 147 IPR009009 -
Lele27g0458 242 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 147 IPR007112 -
Lele27g0458 242 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 239 IPR007117 -
Lele27g0458 242 Pfam Expansin C-terminal domain 151 228 IPR007117 -
Lele27g0458 242 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Lele27g0458 242 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Lele27g0458 242 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Lele27g0458 242 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576
Lele27g0458 242 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Lele27g0458 242 SUPERFAMILY PHL pollen allergen 148 239 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0458 Lele-ChrLele27 5410589 5413132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0458 11 242 Expansin Gene Family AT2G40610 74.486 6.60e-130 365