Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0443 ATGGAGATATCGTTGTTAAACGTGCTTGTTAATGGCATATCCTCGTTTTTGAACTCAACATTTTCCAGAAAATTGAGTTCAGAACCTATTTTGAAGTATTACGAAAAGGAAGAGGATATACTTAAGTTGTTAAAGCCAATACTTGAAGCCATCACTAATAGTGATTTAGCTTCTGATGAAGTGCTTCTGAACATATTTGAAGAACTGAATCAGGCTGTGCAGAAACTAAGGGAGCTTTTCAAGAGTTGGCAACTATTGTGTAGCAAAATTTACATTGTTTTGCAAGTTGAATCCTTGATATCTAAAATTCAGATTTTAGCACTCAACATTTTCAAGCACCTGAAGGCTTCCCATCAATGTCTCCCTAACGAATTAAGTTTTTCACACATAGAGCACTGTATTGAGAAAATAAAGAACTTGGAACATGAAGAAACATCATCTATCATCAAGGAAGCTATCATGGAACAAGTGGAAGGCTTAGGACCAAGTTCAGAGGTCCTTGAAAAACTTGCTGAGATTCTAGGCCTGAGCTCAAATCAAGATCTTCTAATTGAGGCTGTGACCCTTGAAAAGTTGAAAGAGAATGAAGAACAGATTAAATATGCTACAGAAGCTGAATATCTCAACAAGATAATTAATCTTGTAACTTGCATGCATGAGAGACTTATAATGCTCAAGGAAGCTCAGATTTCTAGCCAAGTTCTAATACCTGCAGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGAAAGATCCCGTGATTGTGTCATCGGGGCAAACTTACGAGCGAGCTTTCATTAAGAACTGGATCGATCTCGGGCTTACGGTCTGTCCGAAGACGCGTCAGACTTTGGCTCATACCAACCTAATACCAAATTACACTGTAAAGGCACTGATTGCAAATTGGTGTGAATTGAACAATGTCAAACTAGTTGATGATCCTTTAATAGTGTCCTCAAACTTGAATCATCATTGTAGTTCAACTTCAGAAGGTTCTTCAAGTGATAACATGGCTTGTAGCCAAAGTTTGGATATTTTAAGAATGTCACAAACAAGTTCTAATGATAACATGTCTGCAGCTAACTCAGATAGCCAAGATTCAATGTCATCACCATCTGGAAGGGAATCTTCCAATGATCTTGGTTCCAATGCAATTTTTAATAATTCTTCTCAGCCATTGGAAAATTCAGGTGATAATTCTTCTATGGAGGTTAATCCAAGGTCATATATAGCTAGTGATTCTGCCTTAAAAGTTCGTAGAGACTCCGAATTTTTGCCTCCGTTGTTAGAGGCAAGGTCTCAAATCTTAAGTATATGGAAGCAGCCATCAAAGAATTTAAGGTTAACATCTTCACCTGTTAGTAGTCCTTCTGGTATTGAAACACGGGTTCAGAATTTGGCTAAAGAGTTGAAGAGCTCTTCAATGGAAACTCAGAGAGAAGCAACATCAGAACTACGCCTTCTTTCTAAGCACAATATGGAAAATAGAATTGTGATTGCAAATTGTGGAGTCATTAGTTTATTAGTTGACCTACTCAAGTTGACTGGTACAAAGATCCAAGAAAATGCTGTTACCGCGCTTCTAAACTTATCAATCAATGATAATAACAAGATTTCAATTGCAAATGCTGGTGCAATTGATTCTCTAATTCATGTTCTTGAAACAGGAGGTTCTGAAGAAGCCAAGGAGAATTCCGCTGCCACACTTTATAGCCTATCAATGATGGAAGAAAACAGGATTAGGATAGGGAGATCAGGGGCAATTAAGCCATTGGTTGATTTACTAGCAAATGGGAGTCCAAGAGGGAAAAAAGATGCTTCCATTGCTTTGTTCAACCTGTCGATATTTCACGAAAACAAGGGTCGAATCGTGCAAGCCGGCGCCGTCAAACGCTTCATGGAGTTAATGGATCCAGCGGCCGGGATGGTAGATAAGGCAGTGGCTGTTTTAGCAAATCTTGCATCAATTCCAGAAGGAAGAACTGAAATTGGTCATGAAGGTGCTATTCCTATTCTAGTTGATATAATTGAATTGGGCTCTGCAAGAGGCAAGGAAAATGCAGCTGCCACTCTTCTACATATTTGCTCAAATAGTCCCAGGTTCTTAAGCCTTATGATCCATGAAGGAGCTATCCCACCATTAGTAGCATTGTCACTATCAGGCACACCAAGGGCCAAAGAAAAAGCACAAGCTCTACTTAACCACTGTAGAAGTCAAAGGCATGGTAATGCTATAAGAAGTTGA 2244 0.3886 MEISLLNVLVNGISSFLNSTFSRKLSSEPILKYYEKEEDILKLLKPILEAITNSDLASDEVLLNIFEELNQAVQKLRELFKSWQLLCSKIYIVLQVESLISKIQILALNIFKHLKASHQCLPNELSFSHIEHCIEKIKNLEHEETSSIIKEAIMEQVEGLGPSSEVLEKLAEILGLSSNQDLLIEAVTLEKLKENEEQIKYATEAEYLNKIINLVTCMHERLIMLKEAQISSQVLIPADFCCPLSLELMKDPVIVSSGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCELNNVKLVDDPLIVSSNLNHHCSSTSEGSSSDNMACSQSLDILRMSQTSSNDNMSAANSDSQDSMSSPSGRESSNDLGSNAIFNNSSQPLENSGDNSSMEVNPRSYIASDSALKVRRDSEFLPPLLEARSQILSIWKQPSKNLRLTSSPVSSPSGIETRVQNLAKELKSSSMETQREATSELRLLSKHNMENRIVIANCGVISLLVDLLKLTGTKIQENAVTALLNLSINDNNKISIANAGAIDSLIHVLETGGSEEAKENSAATLYSLSMMEENRIRIGRSGAIKPLVDLLANGSPRGKKDASIALFNLSIFHENKGRIVQAGAVKRFMELMDPAAGMVDKAVAVLANLASIPEGRTEIGHEGAIPILVDIIELGSARGKENAAATLLHICSNSPRFLSLMIHEGAIPPLVALSLSGTPRAKEKAQALLNHCRSQRHGNAIRS 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0443 747 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 311 IPR013083 -
Lele27g0443 747 PANTHER U BOX DOMAIN-CONTAINING 29 736 - -
Lele27g0443 747 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 586 628 IPR000225 GO:0005515
Lele27g0443 747 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 544 587 IPR000225 GO:0005515
Lele27g0443 747 CDD RING-Ubox_PUB 240 282 IPR045210 -
Lele27g0443 747 Pfam Armadillo/beta-catenin-like repeat 577 614 IPR000225 GO:0005515
Lele27g0443 747 Pfam Armadillo/beta-catenin-like repeat 494 531 IPR000225 GO:0005515
Lele27g0443 747 SUPERFAMILY ARM repeat 463 736 IPR016024 -
Lele27g0443 747 MobiDBLite consensus disorder prediction 352 405 - -
Lele27g0443 747 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 503 545 IPR000225 GO:0005515
Lele27g0443 747 FunFam RING-type E3 ubiquitin transferase 449 742 - -
Lele27g0443 747 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Lele27g0443 747 Gene3D - 449 747 IPR011989 -
Lele27g0443 747 SMART arm_5 656 696 IPR000225 GO:0005515
Lele27g0443 747 SMART arm_5 575 615 IPR000225 GO:0005515
Lele27g0443 747 SMART arm_5 616 655 IPR000225 GO:0005515
Lele27g0443 747 SMART arm_5 492 532 IPR000225 GO:0005515
Lele27g0443 747 SMART arm_5 533 574 IPR000225 GO:0005515
Lele27g0443 747 SUPERFAMILY RING/U-box 236 310 - -
Lele27g0443 747 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Lele27g0443 747 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Lele27g0443 747 FunFam RING-type E3 ubiquitin transferase 235 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0443 Lele-ChrLele27 4825509 4829538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0443 1 746 U-box Gene Family AT5G67340 49.599 0.0 645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1646 26 19562171 19570016 Lele27g0443 27 4825509 4829538 hybridization