LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele27g0436	ATGTGCAATAATAATATTAATCAAGGCTTCTTCGACTTGAAGAGCGATTATGAGAAATATTTCCTTTCTCCTTCTTCTTCATCTTTTGAGGTGAAACCCAGTAGGATTAGTGGATTTTCTGGGCTTTTAGATCACTTACCAGTCATTAATGCTTCAAAGATTCAACGGAATAGCGATTCTGGGAAAATTCAACAAAGTAATTATAAGGACCAAGATAGAAACCTGACAAAAAATTTCACATTCCATCCAAAGCATTGTCATTCTTCATCTTTTGATGACGACCCTAGCAAGTCAAATGCATTGATTCCTCAGCTTCAGAAGGACCAAGACAAAATCTTGGCCAATTTTCCTTTCGACCTCGAACCGAAGCATTATTCTGCAACATCCTTTGATAAAAACCCTAATAAGTCACGTGGATTTTCACAGCTTGAGGAGGAACAAGACAGAAACTTGCAAGATTTTACTTTCGACCTCGAACCGAATCATTATCCTGCAACATCCTTTAATAAAAACCCTAACGAGTCATGTGAATTTTCACAGATTCAGCAGGAACATGACAGAAACTTCCCCCATTTTCCTTTCGACCTCGAACCAAAGCATTCTATTGCAACATCATTTGATAAAATCCCTTGCAAGTTTAGTGGATTTTCTCAGCTTCAGCAGGGACATGACAGAAACTTGCCATATTTTTCTTTCTATCACCTCGAACCAAAGCATTCTCTTTCATCATTATCCATTCATGTAAACCCTAGCAAATCCAGTGGATTTTCTCAGTTTCTTGATGAACAAGACAGAAAATTTCCATCATCCTTTGATGAAAACCCTTATAAGTCCAAGGGATTCTCTCATCTTTTGAAGGAACATGAAAGAAACATGCCAGATTTTCGTTTCCACCTCGAACCAAAGCATTCTCTTCCAACATCCTCCTTTGATGTAAACCCTAGCAAGTCAAGTGGATTTTCTCATCAGTTTCTTGAGGAACAAGACAAAAAAATTTCTTCACCATCTGATGACAACCCTTATTATAAGGTAAGTAGATTTTCTCATGTTTTGGAAGAACAAGACAGAAACTTACCAAATTTCCCTTTCCACGTCCAACGAGACCGGCATTATTCTCTTTCGCCATCTTCGTTCATCTTCAATGACAACCCCGGCAAGACAATAAGTGGATTTTCACATCTTCAAGAGGAACCAGACATGAAATTACTATCACAATCTTTCGATGATGGATTTTCTCAACATTATTGGGAGGAACAAGATATCCACTTGTCAGATTATTATCTTTCATCATTCTTCTGTAACAACACCAGCAAGTCTAGGGACGGATTTTCTCAGATCTTGGAGGAACAAGTCAGAAACTTACCAACAATGGATTATCCTTCTTCGTCCTTCGATCGTAAATCTTTTGAAATTTCTGATCAGCTTGTAGACTCACCCACTCTTAATGGTTATAAGCCACAACCAGTGACGACGATTGAAGAAGTTCAAAATGGATATTCTTTTTCTACAGATAAGAGTGTAGCAATTAAAACTGAAAGCACTTCAGGTCAGAACTTGAAGTTTCCTTCAGCGAATTATAGCAACTCCCATACACAAAGACAACAACCTGATGATGGATATAAGTGGAAAAAATATGGGCAAAAACAAGTGAAAGGAACTGAAAATTCAAGAAGTTATTACAAATGCACATATCCCAATTGCGAATCAAAGAAGAAAGTAGAGAGATCTTTAGTAAATGGAGAGATTACTCGGATTTTTTATAGAGGTAAACATAATCATGCCACGCCTCCATCTAATAGGAGCTCAAATGCAAGTTCTTCATCATATTCTGCAATTTCTGCTTTAAATCCTGTGAAAGCGGAAATCTCAGATCATCACTCAGTTTTCAATTATGTTGGAACACATGAGATCAACTCATCAGCTGCATTAATGGTAGATGATGATTTTGAACAGACGAAATCAGGAGGAGGGCGATATGATTTTGATCATGATGGACATGACAAATGGAAAATGGGAGTTAAAGAGAATAAAGATGAGACACCCAAAATTGCGTTCCAGATGCCCAGTAAGATAGATCTTTCCCCAATTCTAGCACTAAGTGCAGTGGGTGCTGGCTTAGTTCGGCTTGTTGTGACTGTTAATGCTAGGTTTGTTTCTAGTTTAGTTTATCCACATGCTCCTCAATCAGCATCACAGTAG	2199	0.3784	MCNNNINQGFFDLKSDYEKYFLSPSSSSFEVKPSRISGFSGLLDHLPVINASKIQRNSDSGKIQQSNYKDQDRNLTKNFTFHPKHCHSSSFDDDPSKSNALIPQLQKDQDKILANFPFDLEPKHYSATSFDKNPNKSRGFSQLEEEQDRNLQDFTFDLEPNHYPATSFNKNPNESCEFSQIQQEHDRNFPHFPFDLEPKHSIATSFDKIPCKFSGFSQLQQGHDRNLPYFSFYHLEPKHSLSSLSIHVNPSKSSGFSQFLDEQDRKFPSSFDENPYKSKGFSHLLKEHERNMPDFRFHLEPKHSLPTSSFDVNPSKSSGFSHQFLEEQDKKISSPSDDNPYYKVSRFSHVLEEQDRNLPNFPFHVQRDRHYSLSPSSFIFNDNPGKTISGFSHLQEEPDMKLLSQSFDDGFSQHYWEEQDIHLSDYYLSSFFCNNTSKSRDGFSQILEEQVRNLPTMDYPSSSFDRKSFEISDQLVDSPTLNGYKPQPVTTIEEVQNGYSFSTDKSVAIKTESTSGQNLKFPSANYSNSHTQRQQPDDGYKWKKYGQKQVKGTENSRSYYKCTYPNCESKKKVERSLVNGEITRIFYRGKHNHATPPSNRSSNASSSSYSAISALNPVKAEISDHHSVFNYVGTHEINSSAALMVDDDFEQTKSGGGRYDFDHDGHDKWKMGVKENKDETPKIAFQMPSKIDLSPILALSAVGAGLVRLVVTVNARFVSSLVYPHAPQSASQ	732

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele27g0436	732	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	500	693	IPR044810	GO:0003700
	Lele27g0436	732	Gene3D	WRKY domain	523	597	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele27g0436	732	Pfam	WRKY DNA -binding domain	537	593	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele27g0436	732	ProSiteProfiles	WRKY domain profile.	531	596	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele27g0436	732	SUPERFAMILY	WRKY DNA-binding domain	532	596	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele27g0436	732	FunFam	WRKY transcription factor	526	597	-	-
	Lele27g0436	732	MobiDBLite	consensus disorder prediction	513	535	-	-
	Lele27g0436	732	MobiDBLite	consensus disorder prediction	513	540	-	-
	Lele27g0436	732	MobiDBLite	consensus disorder prediction	588	607	-	-
	Lele27g0436	732	SMART	WRKY_cls	536	595	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele27g0436	Lele-ChrLele27	4338257	4341969	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele27g0436	537	606	WRKY Transcription Factor Family	AT5G07100	62.857	3.30e-25	102

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lele27g0436		WRKY	1.8e-21	CL0274