LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele27g0414	ATGGCCGCAGCCTTGGAGTGTTGGTCGAGTCGGGCCAGTACGGACGAGGAAATGGTGGAGCAGGTTCTGATGAGGACGCAGGATAGATCCGAGGGTGAAAAGACGTCGGAGAGCTCTTCCGCTGCTGGTGGACCTAAGGAGACTTCGCAGATGCAGAAGAAATTGCAGAGGCTTAGTCGGAATGTTACCGAAGCTATAGCTTCGTTCAAGAACTCGCTCAATCTGGATTCTGCTCGTGACCCGGCGCCTCCTTCGAAGGTAGATAATTCTCGGAAAGTTGTGTGGGGAAGTGTCGTCCGGAATCTTACTCAGCTTTATCCAGGTAGCCAGCTACCGGAGAAGCTCATGTCCAACATTCGCAAGCATTACTATTCGTTGCCTCTCAGCTATTCTCAGGCGGGATTTGATATGAAAGATGTATTTCTGCACATCAAGTTGATGGAGCAAGCATCAGTGGATGACCAGCCTGCAATCCTGATCCAGGAAGAACCAGATAATGAAATTCAAGGGTGTATATTTAAGCTGACTTTTGCTTGTAACTCTCCAATTTCATGGCCCTCAATGTCCAGTGCACTGGATAGTTCATGCATTTGCTGCAAGAAGATACAGATCTTTGAGAAAAAAAGTTGCACACTTGGGATTGTCCTTCTTCTTGTTCAGCCTGGGCAAGATAAATTGATCAGAGTTCGAGTTGAGAATGCTCTAAAATTTGCAATGAAGAAGCCCAAGACCAGTGCAGTGAAGCTTCCCTTTGGCCTTTGTGGATGTCAAGAAGAGAACTCCAAAGGGAGAGAACTTGGAGAGATTGAAGAAGACAGTGGCGACGCATATTATGGAAACGGTTTTGAGAATTCTAGCCAAAAAGATCAGCTACAGGTACCTTTACCTACTTCCTCTTTTATTGTATCCGTGGATGAATGGCAGACAATTCAGTCTGGTGGGGAAGAGATCAAAAAATGGCTATTGAACTCAGATAGTCTTGAGTTTGTAGAAAAGACTGGACCCAATTCATATAAAGGGGTCCACATGGGTAGAAGGGTTGGAATCGAGAAGCTTAAAGGGTGTGATAAAGGAAATTCTTATCAGTTTGAGCTCCATCAAGATCTCCTAGAACTGATGACTTGTGGGCACAAAAAGATTCTGCAATTTTGTGGTGTTTCTGTGGATGAAAATCATGGGTTGTGTGTGGTAACGAAGTTCATGGAAGGTGGTTCAGTTCATGATTTGATGCTAAAGAACAAGAAGCTCCAGATAAAGGAAATCATCAGAATTGCTGTTGATGTGGCCGAGGGCATAAAGTTTATGAATGATCATGGAGTTGCATACAGGGACCTCAATACACAGAGGATTCTATTGGATCGCCATGGAAATGCTTGCTTGGGAGATATGGGTATAGTCACTGCTTGCAAAAATGTTGGAGAGGCAACGGAGTACGAAACTGATGGTTACCGGTGGCTGGCTCCAGAGATAATTGCAGGTGACCCAGAGAGTGTGACAGAGACATGGATGAGTAATGTTTACAGTTTTGGCATGGTTCTCTGGGAGATGGTTACTGGTGAAGCAGCCTATTCTGCATATTCACCAGTACAGGCAGCGGTGGGCATAGCCGCTTGCGGCCTCAGACCCGAGATCCCAAAGGACTGTCCTCAGAGTATGAAAAACATCATGATCAAGTGCTGGAACAATCAACCTTCTAAACGCCCTCAGTTCTCTGAAATATTGGCTACACTCTTGCGTTCAAACAATACCAATAGGTAA	1758	0.4528	MAAALECWSSRASTDEEMVEQVLMRTQDRSEGEKTSESSSAAGGPKETSQMQKKLQRLSRNVTEAIASFKNSLNLDSARDPAPPSKVDNSRKVVWGSVVRNLTQLYPGSQLPEKLMSNIRKHYYSLPLSYSQAGFDMKDVFLHIKLMEQASVDDQPAILIQEEPDNEIQGCIFKLTFACNSPISWPSMSSALDSSCICCKKIQIFEKKSCTLGIVLLLVQPGQDKLIRVRVENALKFAMKKPKTSAVKLPFGLCGCQEENSKGRELGEIEEDSGDAYYGNGFENSSQKDQLQVPLPTSSFIVSVDEWQTIQSGGEEIKKWLLNSDSLEFVEKTGPNSYKGVHMGRRVGIEKLKGCDKGNSYQFELHQDLLELMTCGHKKILQFCGVSVDENHGLCVVTKFMEGGSVHDLMLKNKKLQIKEIIRIAVDVAEGIKFMNDHGVAYRDLNTQRILLDRHGNACLGDMGIVTACKNVGEATEYETDGYRWLAPEIIAGDPESVTETWMSNVYSFGMVLWEMVTGEAAYSAYSPVQAAVGIAACGLRPEIPKDCPQSMKNIMIKCWNNQPSKRPQFSEILATLLRSNNTNR	585

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele27g0414	585	MobiDBLite	consensus disorder prediction	36	55	-	-
	Lele27g0414	585	MobiDBLite	consensus disorder prediction	1	55	-	-
	Lele27g0414	585	SUPERFAMILY	Protein kinase-like (PK-like)	317	577	IPR011009	-
	Lele27g0414	585	Gene3D	Transferase(Phosphotransferase) domain 1	320	583	-	-
	Lele27g0414	585	MobiDBLite	consensus disorder prediction	21	35	-	-
	Lele27g0414	585	ProSiteProfiles	Protein kinase domain profile.	327	578	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele27g0414	585	Pfam	Protein tyrosine and serine/threonine kinase	359	577	IPR001245	GO:0004672\|GO:0006468
	Lele27g0414	585	PRINTS	Tyrosine kinase catalytic domain signature	398	411	IPR001245	GO:0004672\|GO:0006468
	Lele27g0414	585	PRINTS	Tyrosine kinase catalytic domain signature	434	452	IPR001245	GO:0004672\|GO:0006468
	Lele27g0414	585	PRINTS	Tyrosine kinase catalytic domain signature	548	570	IPR001245	GO:0004672\|GO:0006468
	Lele27g0414	585	PRINTS	Tyrosine kinase catalytic domain signature	504	526	IPR001245	GO:0004672\|GO:0006468
	Lele27g0414	585	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	82	577	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele27g0414	Lele-ChrLele27	3841101	3844661	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele27g0414	319	577	MAP Kinase Kinase Kinase	AT2G17700	33.712	2.05e-49	178

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-7	Lele27g0414		PK_Tyr_Ser-Thr	5.5e-42	CL0016