Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0402 ATGTTCCAAAGCTTATCATCTTTGTTTGCTCTCATAGATTACGTCCTTGTGGTATTTATATTTTTTGCTCTATTGTGCATTCTGGAGCCGTGTATTTGTGTTCGAATTGATTTTGCTGTTTTAAGATCATGGTCTCCTGACTTTGACAAATTTGTGTCCTTTAAGCGACTGGGAGAAAAGTGGAATTATCAGCCAGAAGCACAATACAAAGAAGTAACATCAGTTCCAGGCGAAAGAATATTAGATATGTCTAGGATATGTGTTAAGAATCTACCAAAATATGTTGCAGAGGATCGTCTACGGGACTTATTTTCACAAAAAGGAGAAATAACAGATGTAAAGCTTATGCGCACCAAAGATGGTAAGAGTCGGCAATTTGGTTTTATTGGGTTTCGTACAGAGGATGAAGCCAATGAAGCTATAAAGTATTTCAATAGATCTTACCTTGACACCTGTAGAATCACTTGTGAGGTGGCTCGAAAAGTTGGTGATCCAGACATTCCTCGTCCATGGAGTCGGCATTCATTGAAGAAAGGGGAAAAAGTGATCCAAGGTGGGAAGAAAGATGCTGAAAATAGAAGTAGTGCCAAGGCGCAAAGAGGTGGAGAGAAGGAGAGTACCGACATTGTTGATCCACAGCTTCAAGAATTCCTTCAGGTTATGCAGCCTTGGGCTAAGACAAAATTGTGGGCAAATGATACGTTATCAGTGTTGGATAATGTTAGTGAGAAGCAAAAAATAGCTGAGAATAAAAGCAAGGATCTTTCAGTTCCAAAGCATGATGAGTTACTTCAAAGTGGCTCATTAGATGATGAGTCCTCAGATGGCTCATTAGATGATGGGTCCTCAGATGGTCATGAGTCTGAGAAACCAAATAATCTTGTCCATGATGATGCCATTTCAGATATGGAATATTTCAAGAGTCGGGTGACAAAGGAGTGGTCTGATTCTGAAAACAGTGATGATGATGATGATGATGATGATGAAGATAACAATTCTTCTGTGAGCAATGATGACGACAACAAAGAAGACAATGATAGTCATGGTGATGAAGATGAAGAAAATTGTGATGATAAATCTTTGAAAGGAACTGGAAGAGGTGATGCTCAAAACTTAGACCTGTCAGGCCTAGAAGATAACTGTAATGAGGATAGTGCCCATGAAAAGGTTGAAGTGAGAGGTCCTTCTAATTCTTCTGGTGATGAAGAACCTGAGCAAACGGTCCCTTCATCTCTGGGAAATGAGAAGGGAGATTTTGAGTCTTGTCGACTGTTTGTCCGTAATCTACCATATACGGCCACTGAGGAGGAACTTGAAGAACACTTCAGCAAGTTTGGCACTGTCTCGCAGGTTCATCTAGTTGTCGATAAAGATACAAAAAGGTCCAAAGGAATAGCATATATTCATTTCACACTTCCAGAATTTTCAGCCAGGGCACGAGAAGAGTTAGACAATTCAATTTTCCAAGGAAGATTACTGCATGTTTTGCCAGCCGTGCAAAGGCCTTCAGACAGCAAGGAAAAGAATACATCAATGGATCAAAGCTCCAGAACTTTCAAGAAACAGAGAGAAGAAGAGCGGAAAGCAGCTGAAGCTAGTGGAGATACCAGAGCATGGAATAGTCTATTCATGAGCTCTGACACTGTTGTTGAAAACATTGCTCGTAAATATGGTGTAAGTAAAGGTGATTTACTTGACCGAGAAGCTGATGACCTTGCTGTGCGTATTGCTTTGGGAGAAACTCAAGTGATTGCAGAGACAAAAAAGGCCCTTAAAAATGCTGGCGTGAATGTGGAATCTTTGGAGGAATTTGCCAATGGCAAAAAAGTTGGTGTGAAAAGAAGCAACCATGTACTTTTAGTGAAGAACTTGCCATATGGTTCCTCAGAAAATGAGCTAGCAAAGATGTTCGGGAAATTTGGGAGTTTGGACAAAATAATCCTGCCTCCAACAAAGACATTGGCCTTGGTTGTCTACCTTGAACCGGCTGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTTCAAAGATGCGCCATTGTATTTGGAATGGGCTCCTTCCAATGTACTTAGCCCAAGTTTAACATCTCAGAACAATGAAAAGAGTGGTGCAATTGGTGAAAATGAGGCCAAACGGCAGATATTGGAACAACATCTGGAAGGAGTATCAGATATGGACATTGATCAGGACAGAGTTGAGGCACGGTCTCTATTTGTCAAGAACCTCAACTTTAGGACATCAGATGAGAGTTTGAAGAATCATTTTAGTGAACACGTGAAAGAGGGAAGAATTTTGAGTGCCAAGGTGAAGAAGCATTTGAAAAATGGAAAACAGGTTTCTATGGGATTTGGATTTATCGAATTTGATTCTGTGGAGACTGCTACGAATGTTTGCAGAGATTTACAGGGGACTGTTTTGGATGGGCATGCACTTATATTACAACTCTGTCAAATCAAGGACAGACAAGTCCCAAAAACAGTTGAGAAGGACAAAAGCTCAACAAAATTACTTGTAAGAAATGTAGCTTTTGAGGCAACAGAGAAGGAATTGAGACAATTGTTCAGCCCATTCGGCCAGATTAAGAGTTTAAGGTTGCCAATGAAGTTTGGAAATCATAGAGGTTTTGCTTTTGTGGAGTATGTTACACAGCAAGAGGCACAAAATGCACTTAAAGCTCTTTCAAGCACCCACTTGTATGGCAGGCATCTGGTGTTAGAGAGAGCTAAGGAAGGCGAGAGTTTGGAGGAACTACGGGCTCGAACGGCTGCGCAATTTAGTGATGAGCAAAATGGATATCAAAAGTTATCTAAGAAAAGGAAGCACTTGTCAATCTTGGATGAAGGAAGGATGAAGTTTGAAAGAATTGCTGAGTAG 2880 0.4066 MFQSLSSLFALIDYVLVVFIFFALLCILEPCICVRIDFAVLRSWSPDFDKFVSFKRLGEKWNYQPEAQYKEVTSVPGERILDMSRICVKNLPKYVAEDRLRDLFSQKGEITDVKLMRTKDGKSRQFGFIGFRTEDEANEAIKYFNRSYLDTCRITCEVARKVGDPDIPRPWSRHSLKKGEKVIQGGKKDAENRSSAKAQRGGEKESTDIVDPQLQEFLQVMQPWAKTKLWANDTLSVLDNVSEKQKIAENKSKDLSVPKHDELLQSGSLDDESSDGSLDDGSSDGHESEKPNNLVHDDAISDMEYFKSRVTKEWSDSENSDDDDDDDDEDNNSSVSNDDDNKEDNDSHGDEDEENCDDKSLKGTGRGDAQNLDLSGLEDNCNEDSAHEKVEVRGPSNSSGDEEPEQTVPSSLGNEKGDFESCRLFVRNLPYTATEEELEEHFSKFGTVSQVHLVVDKDTKRSKGIAYIHFTLPEFSARAREELDNSIFQGRLLHVLPAVQRPSDSKEKNTSMDQSSRTFKKQREEERKAAEASGDTRAWNSLFMSSDTVVENIARKYGVSKGDLLDREADDLAVRIALGETQVIAETKKALKNAGVNVESLEEFANGKKVGVKRSNHVLLVKNLPYGSSENELAKMFGKFGSLDKIILPPTKTLALVVYLEPAEARAAFRGLAYKRFKDAPLYLEWAPSNVLSPSLTSQNNEKSGAIGENEAKRQILEQHLEGVSDMDIDQDRVEARSLFVKNLNFRTSDESLKNHFSEHVKEGRILSAKVKKHLKNGKQVSMGFGFIEFDSVETATNVCRDLQGTVLDGHALILQLCQIKDRQVPKTVEKDKSSTKLLVRNVAFEATEKELRQLFSPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVLERAKEGESLEELRARTAAQFSDEQNGYQKLSKKRKHLSILDEGRMKFERIAE 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0402 959 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 423 527 - -
Lele27g0402 959 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 617 689 IPR000504 GO:0003723
Lele27g0402 959 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 737 820 IPR000504 GO:0003723
Lele27g0402 959 SUPERFAMILY RNA-binding domain, RBD 831 914 IPR035979 GO:0003676
Lele27g0402 959 SMART rrm1_1 618 685 IPR000504 GO:0003723
Lele27g0402 959 SMART rrm1_1 423 496 IPR000504 GO:0003723
Lele27g0402 959 SMART rrm1_1 738 816 IPR000504 GO:0003723
Lele27g0402 959 SMART rrm1_1 85 157 IPR000504 GO:0003723
Lele27g0402 959 SMART rrm1_1 837 908 IPR000504 GO:0003723
Lele27g0402 959 Gene3D - 734 827 IPR012677 -
Lele27g0402 959 SUPERFAMILY RNA-binding domain, RBD 723 825 IPR035979 GO:0003676
Lele27g0402 959 MobiDBLite consensus disorder prediction 499 533 - -
Lele27g0402 959 MobiDBLite consensus disorder prediction 167 208 - -
Lele27g0402 959 FunFam Multiple RNA-binding domain-containing protein 1 608 710 - -
Lele27g0402 959 MobiDBLite consensus disorder prediction 317 334 - -
Lele27g0402 959 MobiDBLite consensus disorder prediction 506 533 - -
Lele27g0402 959 CDD RRM1_MRD1 84 159 - -
Lele27g0402 959 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 718 831 - -
Lele27g0402 959 SUPERFAMILY RNA-binding domain, RBD 76 171 IPR035979 GO:0003676
Lele27g0402 959 SUPERFAMILY RNA-binding domain, RBD 412 516 IPR035979 GO:0003676
Lele27g0402 959 CDD RRM6_RBM19_RRM5_MRD1 836 910 - -
Lele27g0402 959 MobiDBLite consensus disorder prediction 265 416 - -
Lele27g0402 959 MobiDBLite consensus disorder prediction 380 398 - -
Lele27g0402 959 CDD RRM4_RBM19_RRM3_MRD1 617 688 - -
Lele27g0402 959 MobiDBLite consensus disorder prediction 279 316 - -
Lele27g0402 959 CDD RRM3_RBM19_RRM2_MRD1 423 496 - -
Lele27g0402 959 Gene3D - 383 537 IPR012677 -
Lele27g0402 959 Gene3D - 62 208 IPR012677 -
Lele27g0402 959 CDD RRM5_RBM19_like 737 818 IPR034423 -
Lele27g0402 959 SUPERFAMILY RNA-binding domain, RBD 614 702 IPR035979 GO:0003676
Lele27g0402 959 Gene3D - 609 714 IPR012677 -
Lele27g0402 959 Gene3D - 828 938 IPR012677 -
Lele27g0402 959 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 836 912 IPR000504 GO:0003723
Lele27g0402 959 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 161 IPR000504 GO:0003723
Lele27g0402 959 FunFam Multiple RNA-binding domain-containing protein 1 832 936 - -
Lele27g0402 959 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 154 IPR000504 GO:0003723
Lele27g0402 959 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 838 905 IPR000504 GO:0003723
Lele27g0402 959 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 619 681 IPR000504 GO:0003723
Lele27g0402 959 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 424 494 IPR000504 GO:0003723
Lele27g0402 959 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 739 813 IPR000504 GO:0003723
Lele27g0402 959 FunFam Multiple RNA-binding domain-containing protein 1 83 211 - -
Lele27g0402 959 SMART rrm2_1 738 816 IPR003954 GO:0003676
Lele27g0402 959 SMART rrm2_1 85 157 IPR003954 GO:0003676
Lele27g0402 959 SMART rrm2_1 423 496 IPR003954 GO:0003676
Lele27g0402 959 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 422 500 IPR000504 GO:0003723
Lele27g0402 959 MobiDBLite consensus disorder prediction 399 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0402 Lele-ChrLele27 3681448 3695009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0402 728 928 Eukaryotic Initiation Factors Gene Family AT1G49760 29.108 7.16e-12 67.4