Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0357 ATGAGTTCCTTCTCCATTACACGGAAAAAAACACCCTTCCAAAAGCACAGAGAAGAAGAAGAGGCAAAGAAGAAGAGAGCAGAAGATGAAACTGCACGCTTATATGCTGAGTTTGTTGAGTCATTTCAAGGTGATACCACTCCTGGATCAAAGGCTTTTGTTCGAGGAGGAACAATTAATCCCAATGAAAAATTGAAAGCAGATTCTGAAGGTGAAAAGTCCAAAGATGGGGTTTCTGGTTCAAAGAAGGGAAGTAGGTATGTTCCATCTTTTATACCTCCTCCTTTGGCAACCAAGGGAAAAGAATCTGAGAGGAAAGAGGAGAAACCTAAGGAGAAGGAGAAAGGTAAGTCACGGAACATAGATAATTTTATGGAGGAGTTAAAACATGAGCAAGAGATGAGGGAGAGGCGAAATCAAGATCGTGAACATTGGCGTGATGGGCGCAACACAGAACATTCTACTATTAGCCGCTTTGATGAACTGCCTGATGATTTTGATCCAAGTGGAAAACTGCCTGGATCATTTGATGATGGTGATCCACAAACTACGAATCTATATGTTGGAAATCTCTCTCCAAAGGTTGATGAAAATTTTCTTCTCCGAACTTTTGGAAGATTTGGACCCATTGCTAGTGTGAAGATAATGTGGCCTAGGACAGAGGAGGAACGAAGGCGGCAAAGAAACTGTGGCTTTGTTGCTTTCATGAATAGAGCTGATGGACAGGCTGCTAAAGACGAAATGCAAGGGGTTGTGGTTTATGAGTATGAATTGAAAATTGGATGGGGTAAATCTGTTGCTCTCCCATCACAAGCGCTGCCTGCACCCCCGCCAGGGCAGATGGCCATCAGGAGTAAGGAGGGTGCCACTGTGATCTTGTCTGGTCCATCTGGTCCATCAGGTCCACCAGTAACTTCTGTGCCAAATCAGAACTCTGAACTGGTTCTTACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAAAATGAGCATCTAAGGCATGTGATTGATACCATGGCTTTGTATGTTTTGGACGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGCCGTGGCAATCCTCTTTTCAATTTCTTGTTTGAGCTTGGCTCCAAGGAACATACTTACTATGTTTGGAGACTATACTCATTTGCTCAGGGTGACACTCTTCAAAGATGGCGGACAGAACCCTTCATTATGATAACTGGTAGTGGAAGATGGATTCCTCCATCATTGCCCTCTGCAAAAAGTCCAGAACACGAAAAGGAGTCTGGCTCCACACATGCTGCAGGAAGAAGCAGGCGTGTGGAACCTGAAAGAACACTGACTGATGCACAAAGGGATGAATTTGAGGATATGCTGCGTGCTTTAACAGTAGAAAGAAGTCAAATAAAAGAAGCTATGGGGTTTTCTTTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTTTAACAGAATCCTTGACACTTAAAGAGACCCCCATTGCAAGTAAAGTTGCTAGGCTCATGCTTGTCTCTGATGTTCTTCATAATAGTAGTGCTCCAGTAAGGAATGCATCTGCATATCGTACCAAGTTTGAAGCAACATTGCCTGACATAATGGAGAGTTTCAATGACTTATATTGTAGCGTAACAGGACGTATGACTGCTGAGGCCCTAAAGGAACGAGTGCTAAAAGTTCTGCAAGTGTGGGCAGATTGGTTTCTCTTTTCTGATGCTTATGTGAATGGCTTACGAGCCACATTTCTTCGTTCTGGCAACTCCGGTGTTACACTATTTCATTCCATCTGTGGTGATGCACCTGAAATTGAGAAAAATATACATTCTGAAGATACAGTTGATGGCAGCAAGAGCATCCAAGATTCTGCATTGGCAATGGGCCGAGGAGCTGCAACGAAGGAACTAATGTCTCTTCCTCTTGCTGAGCTGGAAAGACGATGTCGTCACAATGGATTGTCACTTGTGGGTGGTAGGGAAATGATGGTTTCACGGTTGCTTAGCCTGGAGGAGGCAGAAAAGCAAAGGGGTTGTGAACTAGATGATGAATTGAAATATGCTCAGAACCAAGCAAGTTCTGGGAGGTATTCAAGTAGTCGGAGAGAAACAAGCATTGAGTCTGAACCGGTGGGTTTCTCTGGATGGAACCAGTATGGGGAGGATGATTTACCCTCACAAGGCAAAGGCTCAGTATCTCTGGCACAAACTTTGCCCATCCCACACCCTGAATTCAAAGCCTTCACAAAAAAAGAGAATTATGATCCAGTTTTACCAGCTTCTAAATGGGCTCGAGAGGATGATGATAGTGATGATGAACGAAAGGGTCGTGGAAAGGGTTTGGGATTAAGCTACTCATCTTCTGGTAGTGAGAATGCAGGTGATGGTACTATTAAGGCAGATGAGCTGGAGTCTGCTGCTGATACAAGCATTTCCACACCAGCTGATAGTGGAATGAATGAAGAGCAGAGGCAGAAGTTGAGACGCCTAGAAGTTGCTTTAATTGAATACCGGGAGTCTCTTGAAGAGAGGGGAATAAAGAATTTGGAGGAAATTGAGAGAAAAGTCACACTGCACAGGAAACGGCTGCAAGCAGAGTTTGGATTATCAGATTCTGGAGAAGATGGTCAAGGAAGTAGAAGAACATCTTCAGAGAGGAGGGACATCTCAAGAAAACGCCACCGCAGTCGTAGTCGAAGTCATAGTCCACCACGAAGATCATTGGGCAGAGACAGGGAGAGGGAACATGATGCAGACAGGGACCGAGATAGACAGAGAGATAGAGGAGGTTATGATTTTGATAACGATAGAGGTAGGGACCGGGAGAAAAGTGGAAGCAGAGAAAGGGATGATCATGAAAGGGAGAGAGGCAGAGATAGGGACCGGAGGAGACGGACGAAATAA 2907 0.4441 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKAFVRGGTINPNEKLKADSEGEKSKDGVSGSKKGSRYVPSFIPPPLATKGKESERKEEKPKEKEKGKSRNIDNFMEELKHEQEMRERRNQDREHWRDGRNTEHSTISRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPSGPPVTSVPNQNSELVLTPNVPDIMVTPPENEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPSAKSPEHEKESGSTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTVERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIASKVARLMLVSDVLHNSSAPVRNASAYRTKFEATLPDIMESFNDLYCSVTGRMTAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVTLFHSICGDAPEIEKNIHSEDTVDGSKSIQDSALAMGRGAATKELMSLPLAELERRCRHNGLSLVGGREMMVSRLLSLEEAEKQRGCELDDELKYAQNQASSGRYSSSRRETSIESEPVGFSGWNQYGEDDLPSQGKGSVSLAQTLPIPHPEFKAFTKKENYDPVLPASKWAREDDDSDDERKGRGKGLGLSYSSSGSENAGDGTIKADELESAADTSISTPADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIERKVTLHRKRLQAEFGLSDSGEDGQGSRRTSSERRDISRKRHRSRSRSHSPPRRSLGRDREREHDADRDRDRQRDRGGYDFDNDRGRDREKSGSRERDDHERERGRDRDRRRRTK 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0357 968 SMART cwf21_2 820 869 IPR013170 -
Lele27g0357 968 MobiDBLite consensus disorder prediction 905 961 - -
Lele27g0357 968 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 258 IPR000504 GO:0003723
Lele27g0357 968 Pfam Surp module 334 386 IPR000061 GO:0003723|GO:0006396
Lele27g0357 968 ProSiteProfiles CID domain profile. 444 589 IPR006569 -
Lele27g0357 968 MobiDBLite consensus disorder prediction 1 153 - -
Lele27g0357 968 Coils Coil 449 469 - -
Lele27g0357 968 Gene3D - 820 871 - -
Lele27g0357 968 MobiDBLite consensus disorder prediction 691 713 - -
Lele27g0357 968 ProSiteProfiles SAP motif profile. 638 672 IPR003034 -
Lele27g0357 968 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 265 IPR000504 GO:0003723
Lele27g0357 968 SUPERFAMILY RNA-binding domain, RBD 177 264 IPR035979 GO:0003676
Lele27g0357 968 Gene3D Surp module 322 391 IPR035967 GO:0003723|GO:0006396
Lele27g0357 968 MobiDBLite consensus disorder prediction 99 153 - -
Lele27g0357 968 SMART surpneu2 334 388 IPR000061 GO:0003723|GO:0006396
Lele27g0357 968 MobiDBLite consensus disorder prediction 762 780 - -
Lele27g0357 968 MobiDBLite consensus disorder prediction 11 35 - -
Lele27g0357 968 MobiDBLite consensus disorder prediction 807 821 - -
Lele27g0357 968 SUPERFAMILY Surp module (SWAP domain) 310 391 IPR035967 GO:0003723|GO:0006396
Lele27g0357 968 SMART rrm1_1 185 261 IPR000504 GO:0003723
Lele27g0357 968 MobiDBLite consensus disorder prediction 888 904 - -
Lele27g0357 968 Coils Coil 847 867 - -
Lele27g0357 968 ProSiteProfiles SURP motif repeat profile. 336 379 IPR000061 GO:0003723|GO:0006396
Lele27g0357 968 MobiDBLite consensus disorder prediction 411 443 - -
Lele27g0357 968 MobiDBLite consensus disorder prediction 865 968 - -
Lele27g0357 968 MobiDBLite consensus disorder prediction 760 825 - -
Lele27g0357 968 Gene3D - 444 591 IPR008942 -
Lele27g0357 968 SMART 558neu5 451 586 IPR006569 -
Lele27g0357 968 MobiDBLite consensus disorder prediction 418 443 - -
Lele27g0357 968 Pfam CID domain 451 579 IPR006569 -
Lele27g0357 968 MobiDBLite consensus disorder prediction 691 735 - -
Lele27g0357 968 Coils Coil 17 37 - -
Lele27g0357 968 CDD RRM_SR140 183 266 IPR035009 -
Lele27g0357 968 MobiDBLite consensus disorder prediction 65 80 - -
Lele27g0357 968 PANTHER RNA PROCESSING PROTEIN LD23810P 1 891 - -
Lele27g0357 968 Coils Coil 821 841 - -
Lele27g0357 968 SUPERFAMILY ENTH/VHS domain 448 587 IPR008942 -
Lele27g0357 968 Gene3D - 97 267 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0357 Lele-ChrLele27 3107052 3121729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0357 181 261 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.56e-06 48.9