Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0344 ATGGAGTTCGTGGGCAAAACTGTTAAGAAGGAGGTCAAGGAGGTTGGGATTATCTCGGGAACAGTGAAATCTTTCGATTCATCGTTTGGGTTGGTTGGGATCGTTTACGAAGATGGTAATTCTGAGGAGCTTGAATCGTCTGAGGTGGCTTCTCTTGTTCAAGGTGAACCAGAGTTAGTAAAGGTGAAGCGCCGGGGAAGAAAACCCAAAAAGAGGCGTCGTGTGGAAACGAAGCATGATACCAGTGGAAGTCCAGGTAATATTGATGAGAATTTGGGTGTTTCCATGCTAAATGATTCTGAATTTAGGGGGGTTTCGGATGAAGATGTTTGTTCTAGTGGGAATTTAGAAGAAAATGGTGAATTAGATAGTGGGTTGAAGAGAAGCCCGGGTATGGCAAATGGGGCGGGAGGGAATTCGACTTTGGGAACTGAAATCATGGGGAATTTGAATTGGAGTGCCAACTCTTACGGGATCAAAGAAGTTCAACGGACGGAAAGCGGGTATGAAGAGAAATCCAAAGAAAGTATATCTACTAACGGTAATTCCAGCATAACGGATTGTGTAAAAGATGGGGTTGATTTGAATGCTAGACTTAACCTGAACGAGGCCCTGGATCTGAATGATGGGTGTAGTTCACATGTTAAGACTGAGGGTGGTTTGAAGAAAAGGGGCTGTATAGATTTAAATGTGGATGTGAATCATGAAATTGATGCCAGTGCGAACGTCACTGATTTAGGTTGTCCAACCGCTGAAGTGTTGAAGCGGGAATATAATTTTGATTTGAATATGGAGGTACGTGATGAAGCTAAGGAAACTCAGGGTGATACTGCTGGAGACCAACTGTCAGATGGAGGTAGTTTGTTTGGTAAAATGGGGCAAAGCCCTAAGTCAGACACAGATATTAATCGAAATTCTGTACAAGATGATATTGTTAAAAGGAATTTGGATGATATCACTAATTGGATCAAATTGGAGGGAATTGATGGTTTCCATGAGTATGCAGGTAAAGATGCTTCTGAGAGTTTGATTGAGGAAAAGGAAGATGGAGTTTGCAATGGAGGTACTGTGGTAATTGACTCTCTTGGTGTTTCAAACGCTATTTCTGTTAAGGATTGTGATTCTGTGGAGGTTTGGCAGGAACATAGCCCTTCTGAGGCTGGTATTGCTATAACTCATGAATGTCAAAATGAGACAGGAAGCCAATATAAACAAGGAAGTGGCCGAAGGAAGAGAAGAAAACTATCGGACAATCTGAAAGCCACTCCAGAGACAGTTTTAAGGAGGAGTTCTCGCCGTGCATCAGCTCTAAAACGTGATTCATGCCCTGTAACATTGAATATGATGGATGATCCTTTGATGTCTCCAGGGCCTGGTGCTATAACAGAAGAAAAAGCACCTGTTTCTGGTTCTGAGCAGTATGAACAGTGCAGTGAACTTCCACCAAAGCTGCAAGTACCCCCTTCTTCTCAAAATTTGAACTTAGATAACATCCCTGTTCTTGATCTTTTTTCCATTTATGCTTGTTTGAGGTCCTTCAGTACTATACTATTTTTAAGTCCTTTTGAGTTGGAGGATTTTGTAACTGCACTGAAGAGTGTAAATCCTAACATATTATTTGACAACATTCATGTTTCTATTTTACAAACTCTTAGAAAGCACTTGGAATACCTTTCAAATGAGGGTTGCCAAACAGCATCCGATTGCCTAAGAAGTTTGAACTGGGATTTGTTGGACCTGGTCACATGGCCCATTTTTATGGCTGAGTATCTTCTGATTCATGGTTCTGGACTTAAAACTGGTTTTAATCTTAAGTACTTGATGTTTGGAGGTGACTACTACAAGCAGCCTGTAACTTTGAAGATTGAAATTCTTCAGTTCCTTTGTGATGATATGATGGAAGTGGAAGCCATAAGGTTGGAGCTTAACAGAAGATCTTTGGTGACTGAGGCTGATATGAGTTTTGATCAAAGTATGTATTTTGACATTTGCAAGAAAAGAAGAGCTCTAATGGACATGTCTGGCGGCTTTTCTCTGTCTGAGGAAATTGTTGATGTCACAAGTGACTGGAACAGTGATGAATGCTGTCTTTGCAAGATGGATGGAAGTTTAATATGTTGTGATGGTTGCCCTGCTGCATTCCATTCCAGGTGTGTAGGGGTTGCGAATGACCATTTACCTGAAGGTGACTGGTATTGCCCCGAGTGTGCAATTAGCAGACGTAAGCCTTGGATGAAACCACAAAAATCACTTCGAGGGGCAGACCTTTTAGGAATTGATCCTCATGGTCGTCTTTATTTTGATAGCTGTGGGTCAGATTCATCTGACATAAGATCATTGTTCAATTACTACCACATAAATGATCTGCTTGTTGTAATTGAAGTGCTAAAAGCGGCTGATGCTTTCTATGGTAGCATATTAATGGCAATCTGCAAGCGTTGGGATATTCCTTTTAACTTAAATGCTAGCAGGAACATGCATATGAAGACAGTATACTCTGCTATATATCCATCCTCAGCACCTTTTTCATCGTCAGAAGCATTCTTGGACAAGAATCAGGCTGCTGATCAAAGAAAGTATGACGAAACTTCTACTGTACAACCTGTTGGCCAAGAGTTTCTCAAAGGTGAGAGACAGTTAGATTCAGTCATAACAACAGAAAGCCCGTGTGTTGCTTCAGAGGTGTCAGCTGATACCACAAAAATGAGGTCAACCACTGATGATGATCCTCTAATACATGGACTCCATGATTCCAATAGATCTGATGGGGCCCTGAATCAGCCAGGAATACCAGAGAAATTGCACCTAGTCGCTCACTGTTCTTTGAGGTCTTCCCGCTTAGATACAAGCCATAAGGTAAATTTAACATCTGCAGGTATTGGTTATACTGCATCAGCTATGTCCACTGGGAATGGAGCTACTTCAGAAATGCCATGTGGAATTGACTACATAAACTATTACAGCTTTGCAAGAACGGCTTCATTAGTGGCAGAGGAGTTGGCACGTAAATCACCTGAAAAGATCAACAAGAGTATTGAAACGTCTGAAGAAGACTTAATTTCAGAACAAGTGAAGGCTATTGTTAAGAAATCTACGAACTTCTACTGGCCAAGTTCTCAAAATATTAATGCAGCTACCCAAAAGGAAAAATGTGGGTGGTGCTATACGTGCAGAGTTGAAAATGATGACAGAGATTGCTTGTTTAACTCTGTGGCGATGCGTGTTCAGGAAGTGTCTAAAAGTGGTTTAGTTGGGTTTCAACCAAAGAATCAGAATGCCCATCTTAGAGATGTCATATTTTATATTCTCTCCCTTGAGGATCGATTACGTGGGCTTCTATTGGGGCCTTGGTTGAGCCTCCGTCATTCTAAGAATTGGCGTAACAATCTTCTTAAGGCATCTGATGTTGCATCTATCAAATGCTCATTACTGACTTTAGAGTCCAATTTGCGGCCTATTGCTCTTTCGGCAGACTGGGGGAAACATGTGGATTCTGTTGTTACCATGGGTTCGGCTTGTCATATTGTGGCCAGTTCACGCACATCTTGGAGGCATAGTATTGGAAGGAAGAGGGTAAGGTGCTCTGATGAGTCCAGTGCATCTTCAAATGCTAGTGGTCTGGGAGCATATTGGTGGAGAGGTGGTCGGCTTTCCCGTCATTTGTTTAATTGGAAGGTTCTACCAAACTCTCTGGTTACCAAGGCTGCTAGACAAGCTGGGTGTACAAAGATACCTGGCATTCTATATCTCGAGAATTCTGATTTTTCAAAGAGAAGCAAATGTGTTGCTTGGAGAGCTGCTGTTGAGACATCAATTAGTGTTGAGCAACTTGCTATCCAGGTTAGAGAGCTTGATTCAAACATTAGGTGGCATGACGTTGAGAATACTCATCCTCTATGTGTGTTGGACAAGGAATCCAGAAAATCAATCAGGCTGTTCAAAAAAGTAATTGTACGCAGGAAGAGCACTGAAAGGGAATCTGTAAAATATCTTCTTGATTTTGGGAAGCGAAGGGCTGTTCCAGATATTGTCAAGAAACATGGTTCTTTGTTGGAAGAATCCTCAAGTGACAGGAAAAAATATTGGCTGGAAGAACCTTATGTTCCCTTGCATCTCATAAAGAATTTTGAGGACAAAAGAATTGCTCGCAAGTCCAATGAAGTGAAACCAGGCGAAGTTCTGGAGAATAGAGGATTTAATAAGAGGTCTACCCAAAAACGGGGGTTTTCATATTTGTTTGCTAGGATGGAAAGGCCTACCTATCATCAGTGTGGCTACTGCAACAAAGATGTTCCAACCAGGTATCTCTTGTGCTCACTTTTGCTTCAAAATGTTTTGATTCAGTTCCATATCCTGGAAGCTGTGAGCTGCCAGCACTGTAATGGATTCTTCCATAAGAGGCATGTCAGAAAATCTGTTGGCACTGCTGAATGCACATATTCATGTCAGAGATGCCTGGATGGGATGCATGCAAATTCTAATTCTAAAAGGAGAAAACTGGAACCAAAACAAGGGAATATTCAGTCACAAAAGGGTCGAAAGGCCCTCTCAGTGGGCAGACCAGCTAAGCAAAAAGGAAGTAAAAAGTTATTGAGTAAGAGGCGGCAAGGAAAATCTCAAACCAATAAAAAGGTCCCACCAAATATACCTCTTCGTCGTTCAGCCAGGAAGGCCAAATGCTTGTACGTGCAAAAGAAAAGGAACGTAGGACGTAAAAAAGGAAAGAAAAGTAAATCCAAGAAGATGACATCTACTAGGAAGCCCAAGGAAACTACTACTTGTTCTAAGACGGCGGTAACTTTTGAGCGTAAGAAAAGAACTCATTTCTGTAACAGTTACTGGCTTAATGGTCTTAGGTTGTCCACAAAGCCAAATGATGAACGAGTAATGCTGTTTAAGGAGAAAAAGCATCTTGTCCCCTCAGAAGGTTTTTCTAGCACCTTTGATCAACCTAAATGTCATCTTTGTTGTGGAGATGGGTGCACTTTGAATTATATTGCTTGTGAAATCTGTGGAGAGTGGTTTCATGGGGATGCTTTTGGACTCACTCTAGAGAATGTCAGACAACTAATTGGATTTAGGTGTCATGTTTGTCGTGATAGGATTGCACCAATCTGTCCCCAGAAGAATAGTAATGCCTTGGCTAATGCTGAAATCAAAGCTGCAACTGATTGTGCAGAGCCATTGAGTCAGATGTCCTGTCAAAGTCGGAAAAGCTATCCGCTTAATGATCTTCATATACATCAATTACATTCTTTCTCATGAAAAAGGAAAGGAAAAGAAATTCAAAGCTCACTTTTAGGGTTTGTGGCAAGTAATGATAAATCATTTGGCCATTATGTTTTTGGAGGTCCATAG 5358 0.4136 MEFVGKTVKKEVKEVGIISGTVKSFDSSFGLVGIVYEDGNSEELESSEVASLVQGEPELVKVKRRGRKPKKRRRVETKHDTSGSPGNIDENLGVSMLNDSEFRGVSDEDVCSSGNLEENGELDSGLKRSPGMANGAGGNSTLGTEIMGNLNWSANSYGIKEVQRTESGYEEKSKESISTNGNSSITDCVKDGVDLNARLNLNEALDLNDGCSSHVKTEGGLKKRGCIDLNVDVNHEIDASANVTDLGCPTAEVLKREYNFDLNMEVRDEAKETQGDTAGDQLSDGGSLFGKMGQSPKSDTDINRNSVQDDIVKRNLDDITNWIKLEGIDGFHEYAGKDASESLIEEKEDGVCNGGTVVIDSLGVSNAISVKDCDSVEVWQEHSPSEAGIAITHECQNETGSQYKQGSGRRKRRKLSDNLKATPETVLRRSSRRASALKRDSCPVTLNMMDDPLMSPGPGAITEEKAPVSGSEQYEQCSELPPKLQVPPSSQNLNLDNIPVLDLFSIYACLRSFSTILFLSPFELEDFVTALKSVNPNILFDNIHVSILQTLRKHLEYLSNEGCQTASDCLRSLNWDLLDLVTWPIFMAEYLLIHGSGLKTGFNLKYLMFGGDYYKQPVTLKIEILQFLCDDMMEVEAIRLELNRRSLVTEADMSFDQSMYFDICKKRRALMDMSGGFSLSEEIVDVTSDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGVANDHLPEGDWYCPECAISRRKPWMKPQKSLRGADLLGIDPHGRLYFDSCGSDSSDIRSLFNYYHINDLLVVIEVLKAADAFYGSILMAICKRWDIPFNLNASRNMHMKTVYSAIYPSSAPFSSSEAFLDKNQAADQRKYDETSTVQPVGQEFLKGERQLDSVITTESPCVASEVSADTTKMRSTTDDDPLIHGLHDSNRSDGALNQPGIPEKLHLVAHCSLRSSRLDTSHKVNLTSAGIGYTASAMSTGNGATSEMPCGIDYINYYSFARTASLVAEELARKSPEKINKSIETSEEDLISEQVKAIVKKSTNFYWPSSQNINAATQKEKCGWCYTCRVENDDRDCLFNSVAMRVQEVSKSGLVGFQPKNQNAHLRDVIFYILSLEDRLRGLLLGPWLSLRHSKNWRNNLLKASDVASIKCSLLTLESNLRPIALSADWGKHVDSVVTMGSACHIVASSRTSWRHSIGRKRVRCSDESSASSNASGLGAYWWRGGRLSRHLFNWKVLPNSLVTKAARQAGCTKIPGILYLENSDFSKRSKCVAWRAAVETSISVEQLAIQVRELDSNIRWHDVENTHPLCVLDKESRKSIRLFKKVIVRRKSTERESVKYLLDFGKRRAVPDIVKKHGSLLEESSSDRKKYWLEEPYVPLHLIKNFEDKRIARKSNEVKPGEVLENRGFNKRSTQKRGFSYLFARMERPTYHQCGYCNKDVPTRYLLCSLLLQNVLIQFHILEAVSCQHCNGFFHKRHVRKSVGTAECTYSCQRCLDGMHANSNSKRRKLEPKQGNIQSQKGRKALSVGRPAKQKGSKKLLSKRRQGKSQTNKKVPPNIPLRRSARKAKCLYVQKKRNVGRKKGKKSKSKKMTSTRKPKETTTCSKTAVTFERKKRTHFCNSYWLNGLRLSTKPNDERVMLFKEKKHLVPSEGFSSTFDQPKCHLCCGDGCTLNYIACEICGEWFHGDAFGLTLENVRQLIGFRCHVCRDRIAPICPQKNSNALANAEIKAATDCAEPLSQMSCQSRKSYPLNDLHIHQLHSFSXKRKGKEIQSSLLGFVASNDKSFGHYVFGGP 1785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0344 1785 MobiDBLite consensus disorder prediction 1493 1591 - -
Lele27g0344 1785 ProSiteProfiles DDT domain profile. 497 557 IPR018501 -
Lele27g0344 1785 MobiDBLite consensus disorder prediction 398 422 - -
Lele27g0344 1785 PANTHER PHD FINGER FAMILY PROTEIN 2 1704 - -
Lele27g0344 1785 SUPERFAMILY FYVE/PHD zinc finger 679 740 IPR011011 -
Lele27g0344 1785 SMART testlast3 497 557 IPR018501 -
Lele27g0344 1785 MobiDBLite consensus disorder prediction 107 145 - -
Lele27g0344 1785 Pfam PHD-finger 695 737 IPR019787 -
Lele27g0344 1785 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1646 1705 IPR013083 -
Lele27g0344 1785 MobiDBLite consensus disorder prediction 1558 1583 - -
Lele27g0344 1785 ProSitePatterns Zinc finger PHD-type signature. 695 736 IPR019786 -
Lele27g0344 1785 MobiDBLite consensus disorder prediction 267 305 - -
Lele27g0344 1785 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 611 642 IPR028942 -
Lele27g0344 1785 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 686 753 IPR013083 -
Lele27g0344 1785 ProSiteProfiles Zinc finger PHD-type profile. 692 739 IPR019787 -
Lele27g0344 1785 MobiDBLite consensus disorder prediction 65 93 - -
Lele27g0344 1785 MobiDBLite consensus disorder prediction 1526 1540 - -
Lele27g0344 1785 Pfam DDT domain 500 553 IPR018501 -
Lele27g0344 1785 SMART PHD_3 694 737 IPR001965 -
Lele27g0344 1785 SMART PHD_3 1652 1699 IPR001965 -
Lele27g0344 1785 MobiDBLite consensus disorder prediction 902 916 - -
Lele27g0344 1785 SUPERFAMILY FYVE/PHD zinc finger 1650 1704 IPR011011 -
Lele27g0344 1785 MobiDBLite consensus disorder prediction 902 928 - -
Lele27g0344 1785 CDD PHD1_AIRE 694 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0344 Lele-ChrLele27 2978019 2991265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0344 1 1711 PHD Transcription Factor Family AT5G12400 39.559 0.0 1098
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lele27g0344 DDT 1.1e-11 No_clan