Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0292 ATGACGACGACTCTTCAGATGATCGAGGAGGACCAAGGGTTCGATCGGGAATCTTCCGACCAGTTACAGAAGATGAGGGGAAAGCCGTTTTCGTCTTCCTCGGAGCTCCACAAAGCAAAATCCAAGATCAAAACTAATGGAGCTTCAGGTTCAGGTTCAGGTTCATCGGTTCGAGTTTGTGATTTCTGTGGGAAACAGTTCAGTTCTGGAAAAGCCCTAGGAGGTCACAGAAGATATCACATTCAAGCTCAGAGAAAAATGGAGGCTCACCAACAACAAGAAAAGGTCAATCGTCTTCATCTTCATCATAATCAATATCCTTCCAATAATTATACCCTAAGAATCAAGCCCAATAATAATAATATGTCCGAGGATTTCATCAGCGGCGGCGGCGGCGGCGGCGATTATGATAATAATCTCATCAAATCTAATGCTGGGAATCTCAATTCTTCTTCGAGATCTCCTTCTTTCCGTTGTGTTGTCTGCGACAAGGATTTCCCATCGAAGAAGTCACTTTTCGGCCATATGAGATCTCATCCTGAGAGAGAATGGAGAGGTATGAACCCTCCGTTCACTGATATTAACAACACTTTAACTTCTTCTTCTTCAACGGAACAGTTCAAAGTAGTAGAAGATGATCAATATCACAATAACAACAAAAACAATAATAATAATGGATCTTTGTCTTCAAGTTTAGAAGAATCATCAGTTGTAGTTGATCTTTCTTCACCTTGTTCTGGGAGTAGCTGGCTTAAGAAAGATAGAAGAGGAAGAAGAAGCATTGGAGCTGCAGAAGCAGCTCAAACCCTTATGTATATGCATCTCTATGGGGATAACTACATTCATCTTCTTCCTCCTCGCGAGCTGCAGCCTCCTGCTGCAACAGAACTATTACCAGTGAAGAAAAGGAAGAAGAATAATGTGAACCATCATGTTGGTTCTTCATCACCTGGGAAAAAACAAAGATTGGATGATTGCAAGGAGAAATTAGAGGAAGCTGAGAATGAGAATAATATCTGGGACATGAAAGTGATGAGCTTGATGAAAGAGAAGAAGCTTAAGAGGAAGTACAAGAAGAAGATTATCAAGTCAGAAGAAGCAGAAGCAGAAGGAGAATTGCTGATAAGAACTCTGAAGGAACAAGTGAAGTTATCATCATTACAAAGCTATGTATGCAGCATCTGTAATAAATCTTTCTCAAGTTTTCAAGCTTTAGGGGGACACAGATCCAAACACAACAGAGAAAAGAACATAGTTATACGCAGCAAGGGCAAGGAAGCTGTGGAATTACAAAGAGAAGAAGAAGAAGAAGACAAGGTTTGCATCAATGGAGCTTTGTCAAGTGCTGCAGGATTGAGCTGTGAAGAAGAGCTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGCGTCTCTGATTAGTAGTGAAGAGAGATTAGTGTTAAGTTCGAATGATCATGATGAGAATAATAGGAATGAAGAAGCAAACCATGAATCTGGAGGTTCAAAAATACTAGATTTTGATCTGAATGTGCCTTATGTTTCGGAGCAGGAAGCAACTGAGATATAA 1566 0.4042 MTTTLQMIEEDQGFDRESSDQLQKMRGKPFSSSSELHKAKSKIKTNGASGSGSGSSVRVCDFCGKQFSSGKALGGHRRYHIQAQRKMEAHQQQEKVNRLHLHHNQYPSNNYTLRIKPNNNNMSEDFISGGGGGGDYDNNLIKSNAGNLNSSSRSPSFRCVVCDKDFPSKKSLFGHMRSHPEREWRGMNPPFTDINNTLTSSSSTEQFKVVEDDQYHNNNKNNNNNGSLSSSLEESSVVVDLSSPCSGSSWLKKDRRGRRSIGAAEAAQTLMYMHLYGDNYIHLLPPRELQPPAATELLPVKKRKKNNVNHHVGSSSPGKKQRLDDCKEKLEEAENENNIWDMKVMSLMKEKKLKRKYKKKIIKSEEAEAEGELLIRTLKEQVKLSSLQSYVCSICNKSFSSFQALGGHRSKHNREKNIVIRSKGKEAVELQREEEEEDKVCINGALSSAAGLSCEEELEEEEEEEEEGASLISSEERLVLSSNDHDENNRNEEANHESGGSKILDFDLNVPYVSEQEATEI 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0292 521 MobiDBLite consensus disorder prediction 452 521 - -
Lele27g0292 521 SUPERFAMILY beta-beta-alpha zinc fingers 389 418 IPR036236 -
Lele27g0292 521 MobiDBLite consensus disorder prediction 1 55 - -
Lele27g0292 521 MobiDBLite consensus disorder prediction 479 500 - -
Lele27g0292 521 ProSitePatterns Zinc finger C2H2 type domain signature. 392 412 IPR013087 -
Lele27g0292 521 SUPERFAMILY beta-beta-alpha zinc fingers 59 179 IPR036236 -
Lele27g0292 521 Coils Coil 316 370 - -
Lele27g0292 521 SMART c2h2final6 390 412 IPR013087 -
Lele27g0292 521 SMART c2h2final6 58 80 IPR013087 -
Lele27g0292 521 SMART c2h2final6 157 179 IPR013087 -
Lele27g0292 521 MobiDBLite consensus disorder prediction 454 470 - -
Lele27g0292 521 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 37 94 IPR044653 GO:0003700
Lele27g0292 521 Pfam C2H2-type zinc finger 157 181 - -
Lele27g0292 521 Pfam C2H2-type zinc finger 390 414 - -
Lele27g0292 521 Pfam C2H2-type zinc finger 58 80 - -
Lele27g0292 521 MobiDBLite consensus disorder prediction 301 323 - -
Lele27g0292 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 184 IPR013087 -
Lele27g0292 521 Gene3D Classic Zinc Finger 59 179 - -
Lele27g0292 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Lele27g0292 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 390 417 IPR013087 -
Lele27g0292 521 ProSitePatterns Zinc finger C2H2 type domain signature. 159 179 IPR013087 -
Lele27g0292 521 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Lele27g0292 521 Gene3D Classic Zinc Finger 368 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0292 Lele-ChrLele27 2434011 2435576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0292 59 190 C2H2 Transcription Factor Family AT2G26940 31.111 5.55e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele27g0292 zf-C2H2_6 1.6e-10 CL0361