Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0289 ATGTCAAGTGGACGAACACACTGGTGTTATGAGTGTGAACATCCGATTACGCTTGAAGGGAGAGAAGTCGCTTGCCCTTATTGTCATGAAGGCTTTGTGCAAGAACTTAATGAGAGGCATGAGTTTCAACTATATAATGCTCTTGAAGAGTTTCATCCCATGCCTGACTTTTTTGATGCCATACATGCCTTTATGGCACAGAGAGCTCCCGAACCAAGATTTGGGCTTATAGATGCTTTTGACAATTTCATGAGGAGGAGAATAGCTGGGCAATACCCCAACATTGATGGTAGACAAAGGTCTCATAATGCACTATTTCCTGAATGGAGTCAGGATTTTTTCAATTCTGGCCCTTCTTTCATATTTCATGGTACTGGAGGCGAACCAAGGCCTATTGATTTCGGCGGTTTATTGATGGCCCCAGGACTGGAAGCATTTATTCAACAGCTCACAATGAATGATCATAGAGGTCCTCCTCCAGCCTCACATTCTTCAATTGATGCAATGCCTACCATTAATATCACACGAGCGCATCTTCTCTCTGGTTCACATTGTCCAGTCTGTCAAGAAAAATTTGAGCTAGGCTCCGAGGCTAGGAAAATGCCCTGTAACCATATTTATCACTCTGACTGTGTTGTTCCTTGGTTGGTTCAGCATAACTCTTGTCCTGTTTGCCGCGTTGAGCTTCCACCTCCAGGATAG 702 0.4402 MSSGRTHWCYECEHPITLEGREVACPYCHEGFVQELNERHEFQLYNALEEFHPMPDFFDAIHAFMAQRAPEPRFGLIDAFDNFMRRRIAGQYPNIDGRQRSHNALFPEWSQDFFNSGPSFIFHGTGGEPRPIDFGGLLMAPGLEAFIQQLTMNDHRGPPPASHSSIDAMPTINITRAHLLSGSHCPVCQEKFELGSEARKMPCNHIYHSDCVVPWLVQHNSCPVCRVELPPPG 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0289 233 CDD RING-H2_RNF126_like 185 226 - -
Lele27g0289 233 Pfam Ring finger domain 184 226 IPR001841 -
Lele27g0289 233 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Lele27g0289 233 SMART ring_2 185 225 IPR001841 -
Lele27g0289 233 SUPERFAMILY RING/U-box 165 231 - -
Lele27g0289 233 FunFam E3 ubiquitin-protein ligase RING1-like 148 232 - -
Lele27g0289 233 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Lele27g0289 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Lele27g0289 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 94 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0289 Lele-ChrLele27 2395036 2395737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0289 129 230 C3H Transcription Factor Family AT5G01980 41.346 1.70e-23 96.3