Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0256 ATGAACGGCGAATTGCACTCAGAAGATAACAAAGTTTCTATGGAGAAAATTAAGAAAAGGAGGCTTAAAACACCAGCTCAGGTGATGGCCCTGGAAAAATTTTATGATGAGAACAAATATCCCACGGAAGAAATGAAATCGGAACTTGCTGAGGAGTTAGGCTTGACTGAAAAGCAAGTAACTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGTTGAAAGATGAAACATATGCTAATGGAAGACAAGATCGTTCAAGTGGTGTCATCCAGGACCATGTAAGTGGATTAGGGCAAGATTCATGTGGAAGCACTAAACATGGTGATTATAAGCATCTTGATCTGAAAGAGGTTGAGAGTCATGGCCTCTATGGCAATGACTTCTCTGTTGCAGATATGACTTATGAACGTAATAGACACTATAATGAAGATGATGGTGGAATGGACAACACATCTTCTGAGAGTAGATCATCTTTACGAGATCAGTTGTTCTCTCAAGGTCAGGATCCATATAATATGGAGCCTTCTAGATATCTGACAGCTAACAGAGCTCTGCCACCTTTAGTTCCCAAAGCTGCAATTAACACTGGATATAAACCATCAGGATATTTGAAAGTGAAGGGTGAGATAGAAAATGCTGCTATAACTGCTGTCAAGAAGCAATTTGGAAGGAACTATCGGGAAGATGGTCCACTGCTTGGTGTAGAATTTGATTCAGTTCCTCCGGGAGCATTTGAGTGCCAAATTGTAGCTCCAGTTGATGAATCATTCCATACTGTGAATCCTGCTCTTTCCAGTCCTCCAGAAATTTCTGCCATGAAAAGGCAACCCGCCCTTAACCCTAGGTATGACTCCAAATATAGTTCCCATGATTTACATATGGAAGTAGGAGATTTTGGCTCCTTGCATGACACTGACTTGCTGGATAAGAAACCCCGCAGGCACAAGCGATGGCGGACATTTCAGAGTTATACCAATCATTTACCTCGTAGGAACTCCTCGCTGGAGTTATATGAAGATCCCACTGGAGAAGTGCCTGCTTATAATACAATGGGCTCTAAGCATGGTGAAGGGATGAGATCTGATTCTGCTTCTAACCATAGTGATCACTTTAAAGGGGACCTTGTGGTTAAGCAGACAGATTCACTTCTGTATTGCTATGATAATGTCAATCCAAAGAAAATTCAGAGGAGTGAACATGTAAAATCTAAGGCTTCAAATTCATTAAAAAGTTCTCGCATTTCTCTTGATACTGAAGAAAGAGGATTATCTTCAAGGATAGTAAAGGTCCACTATCTAGCTGTGACTTATCTTTACTTTCTGATTCTTCCAAATGAAACCATGATTGCAAAAAGAGTTAAAGATGATCTTTCTCAACAACAAAATCTGAAACATGCACTAGTAGCTGAGATGCAACCTCAGAAAAATCGGAGGTCTGTAACAGAGATACTTTCTAGTTTTAGTGAGGATGAAACCGCCGAAACAAGTTCTTCGCTAGACTAA 1509 0.4016 MNGELHSEDNKVSMEKIKKRRLKTPAQVMALEKFYDENKYPTEEMKSELAEELGLTEKQVTGWFCHRRLKDKRLLKDETYANGRQDRSSGVIQDHVSGLGQDSCGSTKHGDYKHLDLKEVESHGLYGNDFSVADMTYERNRHYNEDDGGMDNTSSESRSSLRDQLFSQGQDPYNMEPSRYLTANRALPPLVPKAAINTGYKPSGYLKVKGEIENAAITAVKKQFGRNYREDGPLLGVEFDSVPPGAFECQIVAPVDESFHTVNPALSSPPEISAMKRQPALNPRYDSKYSSHDLHMEVGDFGSLHDTDLLDKKPRRHKRWRTFQSYTNHLPRRNSSLELYEDPTGEVPAYNTMGSKHGEGMRSDSASNHSDHFKGDLVVKQTDSLLYCYDNVNPKKIQRSEHVKSKASNSLKSSRISLDTEERGLSSRIVKVHYLAVTYLYFLILPNETMIAKRVKDDLSQQQNLKHALVAEMQPQKNRRSVTEILSSFSEDETAETSSSLD 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0256 502 MobiDBLite consensus disorder prediction 84 105 - -
Lele27g0256 502 SMART HOX_1 16 78 IPR001356 GO:0003677
Lele27g0256 502 MobiDBLite consensus disorder prediction 84 104 - -
Lele27g0256 502 Pfam Homeodomain 18 73 IPR001356 GO:0003677
Lele27g0256 502 Gene3D - 7 90 - -
Lele27g0256 502 SUPERFAMILY Homeodomain-like 14 78 IPR009057 -
Lele27g0256 502 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 502 - -
Lele27g0256 502 ProSiteProfiles 'Homeobox' domain profile. 14 74 IPR001356 GO:0003677
Lele27g0256 502 CDD homeodomain 18 73 IPR001356 GO:0003677
Lele27g0256 502 MobiDBLite consensus disorder prediction 142 163 - -
Lele27g0256 502 MobiDBLite consensus disorder prediction 476 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0256 Lele-ChrLele27 2067448 2082324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0256 2 502 Homeobox Transcription Factor Family AT4G03250 40.566 2.75e-82 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele27g0256 Homeodomain 5.6e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1821 25 26002418 26010474 Lele27g0256 27 2067448 2082324 hybridization
Lele26g1857 26 22216796 22224926 Lele27g0256 27 2067448 2082324 hybridization