Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0247 ATGCCCTGGAACGTCATCACCAGGTGGGCCGATCTGGTCCTTTTTCGGTTGGGAATTTGGGGTTCTCTCGGTCTCGGGGGTTTTAGTGACGAGCTTCATGCACTTCCTGTCAATTTGCTTGCTGATCCGTTGTTGGCCCCCTTCGATTCGCTTTTCGCAATTCCTTTGGCTATTGAACTTGTTTTTGATCGGATGAACTTTTCAAATGAAACAGTTTCACATAGTGTCCTGGAAGAAAAAGGCCAAGGACAAAATGCTGATAGAATCCATAAATCAAGTGGCAATGAATGTGGTGATGCATCTTCAAGTGAGAAAGAGTTTGATATGAACATGGATGCTCAGTATCATAGTGATGGTGAACCAGATGCTAGACTGCAAAATGAGGCTACAGCTGATGGGGTTGGTAACATCCAGTCTACTGGAAGTAAAACTGCTATGGTTGGAAGGTGGGGTTCAACTTTTTGGAAGGACTGTCAGCCTATGAGCCATCAGAATGGGCAGGAATATGGGCAAGAATCACAAAGCGGATCAGACTATAGAAATGCAGAAGTGGCTGAAGATAATTCATCCGATGGAAGAGGGGAAAGATTAGATTCAGAAGATGACGATGGACAGAAAGAAGCAGGAAAAGGTCCAAGAGGCCATTCTGATGTGCCTGCTGAGGAGATGTTGTCTGATGAATATTATGAGCAGGAAGAGCACAGTGATTCATTGCATTACAGGGGGATTCATCAACCAACTGGATCAAGTTCATGGCCTCAACGGATGTCTAATTCTGTCAATAGTCGTGCAAATAGGAATTCTAGGATTTCAGATGTTGTTGAAGATGATGGTGATGATGATAATGATAATAACGATGGTGATGCTGATTATGAAGAAGAGGTTGAAGCAGATGAAGATGATCCTGATGATGTGGACTTTGAGCCTGCAACAAGTGGTCGTTCTGCAAACAAGGATAGAGATTGGGAGGGTGAAGAATCAGATGAAGATGATGATAGTGATGATAATCTAGATGTTTCAGATGACGACAATACCTACTATGCAAGAAAATCTACGGGTAGGCAACGTGGCAAAGTGGGACGAACTGTAAAACCTACAAGAGAACGCAAATCATTTGCTGCATCTGGTCGGCAAAGAAAACCTAATACATCTTTTGAAGAGGATGAGTCAACAGCAGAGGATTCTGAGAGTGAAAGTGATGATGATTTCAAAAGCATGAGAAGGAGAGGTGCAAATGCTCGCAAGAATAATGGCTGTTCTTCTGCTGCTGCAAGTTTTTCTGGCCGGAACAGTGAGGTTCGCACTTCTAGTAGGACGGTTAGGAAGAAGGTGTCATATGTTGAAAGTGAAGAAAGTGAAGAAGCAGATGAAGGGAAGAAGAAGAAGTCCCAAAAAGAAGAACTTGAAGAGGAAGATGGTGACTCCATTGAAAAGGTGCTTTGGCATCAGCCAAAGGGCATTGCTGAGGAGGCGCAGAGGAATAATAGATCCACAGAACCTGTTTTATGGAGTAATTTGTTTGATTCTGTACCTGATTGGAATGAGATGGAATTCTTAATAAAATGGAAAGGCCAGTCACATTTGCATTGTCAATGGAAGTCATTTGCTGAGCTGCAAAATCTCAGTGGTTTTAAGAAGGTTTTGAATTATACGAAGAAAGTGACGGAGGACATCAGGTACAGGAACACAATCTCAAGAGAGGAGATTGAGGTCAATGATGTGAGTAAGGAGATGGACTTAGATATTATCAAGCAAAATAGTCAGGTGGAAAGAATCATTGCAGATAGAATCAGCAAAGATAATTCTGGCAATGTTAATATAGAATATTTGGTCAAGTGGCAAGGGCTGTCTTATGCTGAAGTGACTTGGGAGAAGGACACAGATATTGCTTTTGCTCAGCATGTTATTGATGAGTACAAGGCTCGTGATGCTGCAATGTCAGTTCAAGGAAAGATGGTAGATCTACAACGCAAGAAGAGTAAAGCAAGTTTGAGGAAGCTTGATGAACAGCCTCAGTGGTTGAAGGGTGGGAAGCTTCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGTTGGAGAAATGACACAAATGTTATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTTCAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTCCCTTTGTCTACTTTGTCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTTGGTAATCGAGCAGGGCGAGAGGTTTGTCAACAGTATGAATTTTATAATGATAAAAAGGCTGGCATGCCTATAAAATTTAATGCCCTCTTGACAACATATGAAGTGGTTCTGAAGGATAAAGCTGTTCTCTCCAAGATTAAATGGAATTATTTGATGGTTGATGAGGCTCATAGACTGAAAAATAGTGAGGCTCAGTTGTACACTACACTTTCAGAATTTAGCACCAAGAACAAATTGCTCATCACTGGCACTCCACTGCAAAACAGTGTTGAAGAGCTATGGGCTTTGCTTCATTTCCTTGATCCTGATAAGTTCAAGAGCAAGGATGATTTTGTTCAAAACTATAAGAATCTGAGTTCGTTCAATGAAAATGAGCTTGCCAATCTTCATATGGAATTGAGGCCTCACATACTCCGAAGAGTCATCAAAGATGTGGAGAAATCATTGCCCCCAAAAATTGAGCGTATACTTAGAGTTGAAATGTCTCCTCTTCAAAAACAGTATTACAAGTGGATTTTGGAACGTAACTTTCATGATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTACTTAATATTGTGGTTGAATTAAAGAAGTGCTGCAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGTTATGGGGGGGACTCAGGAAGTAGTGATAGCAGTAAACTCGAGAGAATTGTCTTCAGCAGTGGGAAGCTTGTCATACTTGATAAGCTACTTGTTAGATTGCATGAGACTAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGCTGGATATACTGGGCGAGTATATGTCACTTAGAGGATTTCAATTCCAGAGGCTTGATGGCAGTACAAAGGCTGAGTTACGACAGCAGGCAATGGATCATTTTAATGCACCTGGTAGTGATGATTTTTGTTTCCTTCTTTCCACTAGAGCAGGAGGTCTGGGTATCAATCTTGCCACAGCAGACACTGTGATAATATTTGATTCAGACTGGAATCCCCAAAATGACCTCCAGGCCATGAGTAGAGCACATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTTTGACAAGCAAAAGCGTTGAGGAAGATATTTTGGAACGAGCTAAGAAAAAGATGGTCCTCGACCATTTGGTTATTCAAAAATTAAATGCAGAGGGTAGATTGGAGAAGAAAGAGGCCAAAAAAGGAGGAGGCCTTTTTGACAAAAATGAGCTGTCAGCAATTTTAAGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAGAGTAAGAAACGACTTTTAAGTATGGATATAGATGAAATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGTAGCAGAGGGAGAGCAAGCGCATGAACTATTGAGTGCCTTTAAGGTTGCCAATTTCTGCAATGATGAAGATGATGGGAGTTTCTGGAGTCGTTGGATAAAACCTGAGGCGATAGACCAAGCTGAAGAAGCTTTGGCTCCACGTGCTGCAAGGAACATTAAAAGCTATGCAGAGCCCAATCAATCTGAAAGAAGTAGTAAACGAAAAAAGAAAGAACCTGAGCCTTCTGAGCGAGTTCAGAAGCGCCGGAAAGCAGAGTATTCAACTCCTGCAATGCCAATGATTGAGGGAGCATCAGCCCAAGCTAGGAGTTGGTCCTATGGGAATGTATCTAAAAGAGATGCACTACGATTTTCTCGTGCAGTTATGAAATTTGGGAATGAGAACCAAATCCACTTAATAGCTGCTGACGTTAGTGGAGCATTTGCAGCTGCTCCGCCTGAAGCTCAGATTGAACTCTTCAATTCTCTAATTGATGGCTGTAAAGAAGCAGCGGAACTAGGAAGTATGGACCCAAAGGGACCTCTGTTGGATTTTTTTGGTGTCCCAGTGAAGGCAAATGATCTGCTTAACCGTGTTCAAGAACTCCAACTCTTGGAAAAGCGCATTAGTAGATATGAAGATCCTATTGCACAATTTCGTGTTTTAACATATCTTAAACCTTCAAACTGGTCTAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGATTGCTTCTTGGACTTCATTACCATGGATTTGGTAATTGGGAAAAGATACGATTAGATGAAAGGCTTGGCCTCATGAAGAAGATTGCACCAGTTGAACTTCATCACCATGAAACTTTCTTGCCACGAGCTCCCAATTTGAGAGATCGTGCTAATGCCCTTTTGGAACAAGAACTTCTTGTCCTTGGCGGTAAAAATGCCAATAGTAAAGGGGGACGCAAGGCTTCCAAGAAGGAGAAGGAAAATCTTACGAACATTACCGTTGCACGTGGGCCAGACAAGAGAAAATTAAGTTCTTCTAAAGTTAATGTCCAAACGAGAAAGGATAGATCCCTGAGGCCCCAGAGGATTGAACCAATAGTAAAAGAAGAGGGTGAAATGTCTGACAATGATGAAGTGTATGAGCAGTTCAAGGAAGTGAAATGGATGGAATGGTGTCAAGATGTGATGATTGATGAAATGAAAACCTTGAAACGTCTGCACAGGTTGCAGACAACCAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTCCAAAATCCGCAATTATTTACAGCTTCTTGGGCTGAGGATAGATCAAATCGTGTCAGATCATGAAGAGGAACCTTACAAGCAAGATAGGATGACTACGCGATTGTGGAACTATGTCTCTACCTTCTCCCATCTTTCAGGGGAGAGGCTGCATCAAATCTATTCCAAACTCAAACAGGAGCAACAAGATGAGGCTGGGGTTGGCCCCTCTCACATCAATGGGTCAGTATCTGGTCCATTTCGTAGGAACCCTCACCATATGGAGAGACAAAGAGGATACAAAAATGTGAGTTCCTATCAAATGCCAGAACCAGTTCACAATACAGGAAAATCCGAAGCTTGGAAACGAAGGAGGAGAGGAGAAGGCGACGGTCATTTTCAGGGTCAGCCACCATCTCAGAGAGCTATGAGTAATGGAGTCCAAATATCTGACCCTAACTCACTGGGGATTCTTGGGGCTGGACCCTCCGATAGACGTTTGGGTAGCGAGAAACCTTACAGGACACGACCTGGTGGAGCTCCTCCAAGACAGGGTTTCTCCTCAGGCATAAAATAG 5430 0.4203 MPWNVITRWADLVLFRLGIWGSLGLGGFSDELHALPVNLLADPLLAPFDSLFAIPLAIELVFDRMNFSNETVSHSVLEEKGQGQNADRIHKSSGNECGDASSSEKEFDMNMDAQYHSDGEPDARLQNEATADGVGNIQSTGSKTAMVGRWGSTFWKDCQPMSHQNGQEYGQESQSGSDYRNAEVAEDNSSDGRGERLDSEDDDGQKEAGKGPRGHSDVPAEEMLSDEYYEQEEHSDSLHYRGIHQPTGSSSWPQRMSNSVNSRANRNSRISDVVEDDGDDDNDNNDGDADYEEEVEADEDDPDDVDFEPATSGRSANKDRDWEGEESDEDDDSDDNLDVSDDDNTYYARKSTGRQRGKVGRTVKPTRERKSFAASGRQRKPNTSFEEDESTAEDSESESDDDFKSMRRRGANARKNNGCSSAAASFSGRNSEVRTSSRTVRKKVSYVESEESEEADEGKKKKSQKEELEEEDGDSIEKVLWHQPKGIAEEAQRNNRSTEPVLWSNLFDSVPDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKVTEDIRYRNTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVNIEYLVKWQGLSYAEVTWEKDTDIAFAQHVIDEYKARDAAMSVQGKMVDLQRKKSKASLRKLDEQPQWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGNRAGREVCQQYEFYNDKKAGMPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDSSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFLTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGGLFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKVAEGEQAHELLSAFKVANFCNDEDDGSFWSRWIKPEAIDQAEEALAPRAARNIKSYAEPNQSERSSKRKKKEPEPSERVQKRRKAEYSTPAMPMIEGASAQARSWSYGNVSKRDALRFSRAVMKFGNENQIHLIAADVSGAFAAAPPEAQIELFNSLIDGCKEAAELGSMDPKGPLLDFFGVPVKANDLLNRVQELQLLEKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGLHYHGFGNWEKIRLDERLGLMKKIAPVELHHHETFLPRAPNLRDRANALLEQELLVLGGKNANSKGGRKASKKEKENLTNITVARGPDKRKLSSSKVNVQTRKDRSLRPQRIEPIVKEEGEMSDNDEVYEQFKEVKWMEWCQDVMIDEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGLRIDQIVSDHEEEPYKQDRMTTRLWNYVSTFSHLSGERLHQIYSKLKQEQQDEAGVGPSHINGSVSGPFRRNPHHMERQRGYKNVSSYQMPEPVHNTGKSEAWKRRRRGEGDGHFQGQPPSQRAMSNGVQISDPNSLGILGAGPSDRRLGSEKPYRTRPGGAPPRQGFSSGIK 1809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0247 1809 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 910 1140 - -
Lele27g0247 1809 Pfam Domain of unknown function (DUF4208) 1589 1681 IPR025260 -
Lele27g0247 1809 SUPERFAMILY Chromo domain-like 471 554 IPR016197 -
Lele27g0247 1809 Gene3D - 1406 1510 - -
Lele27g0247 1809 MobiDBLite consensus disorder prediction 158 183 - -
Lele27g0247 1809 MobiDBLite consensus disorder prediction 1734 1749 - -
Lele27g0247 1809 MobiDBLite consensus disorder prediction 1274 1298 - -
Lele27g0247 1809 CDD SF2_C_SNF 986 1120 - -
Lele27g0247 1809 SUPERFAMILY Chromo domain-like 566 642 IPR016197 -
Lele27g0247 1809 SMART chromo_7 290 555 IPR000953 -
Lele27g0247 1809 SMART chromo_7 585 644 IPR000953 -
Lele27g0247 1809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 666 900 IPR027417 -
Lele27g0247 1809 MobiDBLite consensus disorder prediction 1263 1302 - -
Lele27g0247 1809 Gene3D - 910 1140 IPR027417 -
Lele27g0247 1809 MobiDBLite consensus disorder prediction 414 434 - -
Lele27g0247 1809 MobiDBLite consensus disorder prediction 1684 1809 - -
Lele27g0247 1809 Pfam Helicase conserved C-terminal domain 996 1109 IPR001650 -
Lele27g0247 1809 CDD CD2_tandem 585 641 - -
Lele27g0247 1809 Coils Coil 1193 1220 - -
Lele27g0247 1809 FunFam Chromo domain-containing protein 1 462 587 - -
Lele27g0247 1809 Pfam SNF2-related domain 698 967 IPR000330 GO:0005524|GO:0140658
Lele27g0247 1809 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 999 1150 IPR001650 -
Lele27g0247 1809 MobiDBLite consensus disorder prediction 274 306 - -
Lele27g0247 1809 MobiDBLite consensus disorder prediction 242 268 - -
Lele27g0247 1809 Coils Coil 451 471 - -
Lele27g0247 1809 MobiDBLite consensus disorder prediction 1755 1770 - -
Lele27g0247 1809 MobiDBLite consensus disorder prediction 158 477 - -
Lele27g0247 1809 SMART helicmild6 1025 1109 IPR001650 -
Lele27g0247 1809 SMART ultradead3 675 874 IPR014001 -
Lele27g0247 1809 ProSiteProfiles Chromo and chromo shadow domain profile. 474 553 IPR000953 -
Lele27g0247 1809 CDD CD1_tandem 472 552 - -
Lele27g0247 1809 MobiDBLite consensus disorder prediction 184 222 - -
Lele27g0247 1809 Gene3D - 670 909 IPR038718 -
Lele27g0247 1809 Pfam Chromo (CHRromatin Organisation MOdifier) domain 588 642 IPR023780 -
Lele27g0247 1809 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 240 1739 - -
Lele27g0247 1809 SMART DUF4208_2 1577 1682 IPR025260 -
Lele27g0247 1809 FunFam Photoperiod-independent early flowering 1 649 923 - -
Lele27g0247 1809 MobiDBLite consensus disorder prediction 78 104 - -
Lele27g0247 1809 FunFam protein CHROMATIN REMODELING 5 isoform X2 589 641 - -
Lele27g0247 1809 MobiDBLite consensus disorder prediction 323 341 - -
Lele27g0247 1809 Gene3D - 589 641 - -
Lele27g0247 1809 ProSiteProfiles Chromo and chromo shadow domain profile. 587 651 IPR000953 -
Lele27g0247 1809 MobiDBLite consensus disorder prediction 435 477 - -
Lele27g0247 1809 Gene3D - 459 587 - -
Lele27g0247 1809 MobiDBLite consensus disorder prediction 361 387 - -
Lele27g0247 1809 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 691 863 IPR014001 -
Lele27g0247 1809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 903 1185 IPR027417 -
Lele27g0247 1809 Coils Coil 1139 1159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0247 Lele-ChrLele27 1962937 1989288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0247 701 1136 RAD5 or RAD16-like Gene Family AT1G02670 25.941 4.16e-34 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele27g0247 SNF2_N 3.6e-65 CL0023