Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0240 ATGAGTCTTTCTTCTTCAGGAGTTGGTCAACCGGCTCAAGAAGGGGAGACAAAATGTTTAAATTCTGAACTATGGCATGCGTGTTCTGGTCCTCTGGTGTCTCTACCACCTGTTGGAAGTCGTGTGGTCTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCCGCTTCAACAAACAAGGAAGTAGATGCACATATTCCCAGTTACCCTAACTTGCCACCACAGCTTATCTGTCAGCTTCACAATGTGACAATGCATGCAGATGTGGAAACAGATGAAGTATATGCTCAAATGACTCTGCAACCTTTAAGTCAGCAAGAGCAAAAGGATATGTATCTACTGCCTGCAGAATTTGGTACTGCCAGCAAACAACCAACCAACTACTTCTGCAAAACATTAACAGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCTGCTGAAAAAGTCTTCCCTCCTCTTGATTACTCGCAGCAGCCTCCTGCACAGGAACTAATTGCAAGGGATCTTCATGATAATGAATGGAAATTCAAACACATTTTTCGAGGTCAGCCGAAGAGGCATCTTCTGACTACAGGGTGGAGTGTTTTTGTTAGTGCTAAGAGGCTCATTGCTGGTGATTCAGTCCTTTTTATCTGGAATGACAAAAATCAACTACTCTTGGGAATCCGGCGAGCAAATCGTCCACAGACTGTCATGCCGTCTTCAGTCCTGTCAAGTGACAGCATGCATATAGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCTACAAATAGCCGCTTTACTATATTCTATAACCCAAGGACAAGCCCATCAGAATTTGTCATTCCCTTAGCTAAGTATGTCAAAGCTGTATATCATACCCGAGTTTCTGTTGGCATGCGATTTAGGATGTTATTCGAGACAGAAGAATCAAGTGTCCGTAGGTACATGGGTACTATAACAGGGATTAGTGATTTAGATCCTGTTCGCTGGCCAAATTCTCACTGGCGTTCAGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGACAGGCAGCCTAGAGTTTCCTTGTGGGAGATTGAACCGTTGGCAACATTCCCTATGTATCCATCCCCATTCCCTTTGAGGCTGAAACGCCCTTGGCCATCAGGACTACCTTCTTCTGGTCTAAAGGATGGTGACATTAGCATTGGTTCTCCATTCACTTGGCTCCAAGGTGGGCTTGGGGATCAAGGTATGCAATCTCTGAACTTCCAGGCACTGGGGGTTGCTCCATGGATGCAGCCAAGACTTGATGCTTCTATGTCAGGACTTCAGCCAGAAATATACCAAGCAATGGCTGCTACTGCTCTTCAGGAAATGAGGGCAATGGGTCCATCTAAGCCGCCTTCTGAATCTCTGCTGCAGTTTCAGCAGTCTTCAAATGTTCCTGGTGCTCCTTCTGGTATCCAGAGGCAAGTGTTACAGCAGTCTCAGTCCCAAAATGTCCTACACAACTTGCAAGAAAACCAGATTCCTTCTCAGTCTTCACTTCTGCAACGACAGTTGCAACGTTACCATCCTTATAATGATCAGAGGCAGCAGCAGCAGCAACCTAACAGTTTACCTGTTCAGCAGCAGATCTCAAAAGTTGTCTCTCCTTTGTCTAATTTTGCATCACCTACCCAGTTTCTCTGTCCATCCATGCCAGCCATTTCTTCAAATTGCCAGCAGCAGAGTTTTCGCGAACCTGCCAGGAACCAAATTCCCAGCTCTGATGTTTCTGCTATCCACAGTCTACTAGGATCGTTTCACCAGGATGGAGTATCCCAGTTACTTAACATGAATGGATCCAACTCTCTGATTTCTCCTGCTTCCTTACTACCCAAGCAAATAACTGGTGAGCCTCAGCTTCAAACTGCTGCTGCTCAGTGTGTATTACCCCAGGTGGAAAACTTGGGAACATCACACTCAAATGTATCTGAACTTCCTATTTTACCTCCATTTCCTGGAAGAGAATATTCTGCATACCAAGGGATTGATTATCCTCCAAGTTCAGACATGACAACATCAAGTTGTGTAGATGAATCTGGTTTTTTGCAGTCTTCTGAAAATGTGTTGCAAGCAAATACATCAACTGGAACCTTCGTCAAGGTTCACAAGTCAGGGTGCTTTGGGAGGTCACTGGACATCTCTAAGTTTAGCAGCTACGATGAACTACGTAGTGAGCTTGCCCGCATGTTTGGGCTTGAAGGGCAACTAGAGAACCCTCAGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGCATGATGTTCTTCTCCTTGGTGATGACCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATCAAGATTCTGTCTCCACTTGAAGTACAACAAATGGGCAGAGAAAGTCTTGGTCCCACAGCTTCTACATTGAGCCACAAGCTTTCTACCACTAGCAATGCTTGCGACCACAACCACGCCAGTCGACAAGAGTTGAGAAATCCTAGCAATGGCATTGCGTCGATGGGATCTCTAGACTACTAG 2523 0.4602 MSLSSSGVGQPAQEGETKCLNSELWHACSGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPSYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSQQEQKDMYLLPAEFGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFKHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRTSPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLATFPMYPSPFPLRLKRPWPSGLPSSGLKDGDISIGSPFTWLQGGLGDQGMQSLNFQALGVAPWMQPRLDASMSGLQPEIYQAMAATALQEMRAMGPSKPPSESLLQFQQSSNVPGAPSGIQRQVLQQSQSQNVLHNLQENQIPSQSSLLQRQLQRYHPYNDQRQQQQQPNSLPVQQQISKVVSPLSNFASPTQFLCPSMPAISSNCQQQSFREPARNQIPSSDVSAIHSLLGSFHQDGVSQLLNMNGSNSLISPASLLPKQITGEPQLQTAAAQCVLPQVENLGTSHSNVSELPILPPFPGREYSAYQGIDYPPSSDMTTSSCVDESGFLQSSENVLQANTSTGTFVKVHKSGCFGRSLDISKFSSYDELRSELARMFGLEGQLENPQRSGWQLVFVDREHDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGRESLGPTASTLSHKLSTTSNACDHNHASRQELRNPSNGIASMGSLDY 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0240 840 Gene3D - 126 229 IPR015300 -
Lele27g0240 840 ProSiteProfiles PB1 domain profile. 704 788 IPR000270 GO:0005515
Lele27g0240 840 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Lele27g0240 840 MobiDBLite consensus disorder prediction 452 487 - -
Lele27g0240 840 SMART B3_2 128 230 IPR003340 GO:0003677
Lele27g0240 840 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 793 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele27g0240 840 MobiDBLite consensus disorder prediction 818 840 - -
Lele27g0240 840 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele27g0240 840 SUPERFAMILY DNA-binding pseudobarrel domain 114 257 IPR015300 -
Lele27g0240 840 FunFam Auxin response factor 292 364 - -
Lele27g0240 840 FunFam Auxin response factor 126 230 - -
Lele27g0240 840 Pfam AUX/IAA family 696 786 IPR033389 -
Lele27g0240 840 Gene3D - 700 793 - -
Lele27g0240 840 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Lele27g0240 840 CDD B3_DNA 127 228 IPR003340 GO:0003677
Lele27g0240 840 MobiDBLite consensus disorder prediction 461 487 - -
Lele27g0240 840 FunFam Auxin response factor 699 793 - -
Lele27g0240 840 Gene3D - 292 364 - -
Lele27g0240 840 SUPERFAMILY CAD & PB1 domains 694 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0240 Lele-ChrLele27 1890185 1902117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0240 522 840 B3 DNA Binding Superfamily AT1G30330 44.675 2.14e-65 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele27g0240 AUX_IAA 1.5e-07 CL0072