Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0227 ATGGCGAGACGACCAAGACAGAAGAACCGGTCGACACTGATCACAGACAACAAAACCAAGCATGTCACCTTCTCCAAGCGTCGTTTTTCCGTCTTCAAGAAAGCCAGCGAGCTCTGTACCTTGTGCGCCGTCGAGATGGCGCTCATCATCTTCTCTCCCGGCGGAAAACCCTACTCGTTCGGCAATCCTTCGACTGAAGCAGTTCTCAACAGACTGCTCCACCCTGGTTCTGCAACTCCTGCGCCGATTTGTAGTAACTCTTCTTATTCTGCAGAAGAAAGGGCCCGACGAGAAGCAACGATGGCGGAACTGATCAAGCAATACAACGATCTGCATGAACAGTTGCAGGAAGAGAAGAAACGAGAGAAGGAACTGAAGAAAAAGATGAAGGATCTTCCAGATATCGAGAAGATGAATAACAGAGATGAACTGATGAAGTGGAACGAATCTTTTGAAGTTCTGAGAGTGAAATTACGCGATCGTAAAGAGGAGCTTTTAGCTGCGGATTTAACGTTGGGTGGTGTGTATTCTGCAGGAGAAGCTTCTTCTTCTTCAAGCTCTGCGCCGAAAACTGATCATCGTCAAGCTGAAGGAGCAGAAAATTTTTCTGCAAATGCCAACATGAGGTCATCTTAG 636 0.4717 MARRPRQKNRSTLITDNKTKHVTFSKRRFSVFKKASELCTLCAVEMALIIFSPGGKPYSFGNPSTEAVLNRLLHPGSATPAPICSNSSYSAEERARREATMAELIKQYNDLHEQLQEEKKREKELKKKMKDLPDIEKMNNRDELMKWNESFEVLRVKLRDRKEELLAADLTLGGVYSAGEASSSSSSAPKTDHRQAEGAENFSANANMRSS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0227 211 Gene3D - 17 80 IPR036879 GO:0003677|GO:0046983
Lele27g0227 211 SUPERFAMILY SRF-like 6 74 IPR036879 GO:0003677|GO:0046983
Lele27g0227 211 PRINTS MADS domain signature 6 26 IPR002100 GO:0003677|GO:0046983
Lele27g0227 211 PRINTS MADS domain signature 26 41 IPR002100 GO:0003677|GO:0046983
Lele27g0227 211 PRINTS MADS domain signature 41 62 IPR002100 GO:0003677|GO:0046983
Lele27g0227 211 FunFam Agamous-like MADS-box protein AGL62 16 81 - -
Lele27g0227 211 ProSiteProfiles MADS-box domain profile. 4 64 IPR002100 GO:0003677|GO:0046983
Lele27g0227 211 Coils Coil 98 132 - -
Lele27g0227 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 60 IPR002100 GO:0003677|GO:0046983
Lele27g0227 211 MobiDBLite consensus disorder prediction 177 211 - -
Lele27g0227 211 PANTHER MADS BOX PROTEIN 6 157 - -
Lele27g0227 211 SMART madsneu2 2 63 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0227 Lele-ChrLele27 1783126 1783761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0227 6 127 Type I MADS-box Gene Family AT3G66656 41.463 3.10e-25 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele27g0227 SRF-TF 1e-20 No_clan