Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0210 ATGCCATTACAAGGAGGTGGCTTCATGAATCACGACAAGGAATTCCCCTCTCAGAAGCAGACCAGGATTTTCTCTGGGTCCAAGCAAGACGATAACATCACTATGGCTTTGAAGTTTTCTCTCGTTCTAGTTCTACTTGTAATCTGTTCCTGCACTGTGGAGGTTATTTCCAGGAACAACAATCTGAACCGTCTCAAGAAAAATGACTCTTCTCTCGCTGCCATCAAAATGCCTGATCATCCAAGCTTCAATACTGTGTCTTCTTCTGCAAATAATGACTGTAGCTTCTCAAACTCTGAGAAATTTGGGCATTCAGGAGTAACCACTTCAGATGAAGATACTGTTGATGATTATGTAGCGACACCACATAAACAATTGCTAAAGCTCGATCTGAAACGCCGACCGGTGACGGTGAGTGAAGATGCCGAGCCAAAAAAGCCTGTGATTGATTTCACAATTCGTGACTTGACCAGAATCCAGACCCTTCATAGAAGGGTCATAGAGAAGAAGAACCAAAACACTGTTTCAAGGCTGCAGAAAACACAGCTCAAATCAAATCAAATCAAGGCTGTTACTCCGGCACCGGCAGCTGTGCCGGAGTATTTCAAAAATGGGTATCCCGGCCGGCTTGTGGCAACATTGGAATCAGGGGCCAGTCTAGGTTCTGGAGAGTATTTCATGGATGTGTTTGTGGGTACACCTCCAAAACATTTCTCTTTGATACTTGATACAGGAAGTGATCTTAATTGGATTCAATGTGTTCCTTGTTATGTTTGTTTTGAGCAAAGTGGACCTCACTATGATCCTAAAGATTCAAGCTCCTTCAAGAACATAAGCTGCCATGATAAACGGTGCCGATTAGTGTCATCCCCTGATCCACCTCATGCTTGCAAGAATGAGAACCAGACCTGTCCTTACTTCTACTGGTATGGAGATAGCTCCAATACAACTGGGGATTTTGCTCTTGAGACTTTCACAGTTAATCTCACCACATCTACCGGGAAGTCTGAGTTCAGGCGTGTTGAGAATGTAATGTTTGGTTGTGGACATTGGAATAGAGGTCTCTTCCATGGAGCTGCTGGGTTGCTAGGGTTAGGAAGAGGGCCCTTGTCATTTGCTTCTCAGCTTCAATCTCTTTATGGTCATTCATTTTCCTATTGCCTTGTGGATAGAAACAGCAACATTAGCAGCAAACTGATATTTGGGGAAGACAAGAAACTTCTCAGCAATCCAAACTTGAATTTCACTTCATTTGTGAGTGGGAAAGAAAACCCAGTTGATACATTTTACTATGTGCAGATAAAATCTGTCATGGTTGGTGGTGAAGTACTGAAAATACCAAAGGAAACTTGGCTTGTATCTTCAGAAGAAGAAGGTGTTGGTGGTGGTGGAGGAACCATCATTGATTCTGGCACTACGCTGACTTATTTTGCAGAGCCTGCTTATGAGATTATCAAGGAGGCTTTCATGAAGAAGATCAAGGGCTACCATATGGTTGAAGAAGAAGGGCCCGTTCCATTAAAGCTATGTTATAATGTTTCTGGGTTTGAAGCTATTGAGCTGCCTGATTTTGGGATCTTGTTTGAAGATGGAGCTGTTTGGGATTTCCCTGTGGAGAATTACTTCATTGAGATTGAACCAGGTGGCGTTGTTTGTTTGGCAATTCTGGGCACTCCTCATTCTGCTCTCTCTATAATTGGAAACTATCAGCAGCAGAACTTTCACATTCTCTATGATCTCAAGAATTCCAGACTTGGATATGCACCAGTGAATTGTGCTGATTCGTGCTTCTTGCCCTTGCGTTCATCGTCCCAAATGGTTTCCTTCAGGTTTCACCAGTACCAGGTGGTGGGAAGGGCCCTTCCCACAGAGACAGATGAGCACCCCAAGATCTACCGTATGAAGCTTTGGGCCACCAATGAAGTCCGTGCCAAATCCAAGTTCTGGTATTTCCTGAGAAAGCTGAAGAAGGTGAAGAAAAGTAACGGGCAAGTGCTAGCCATTAACGAGATTTATGAGAAAAACCCTACCAAGATTGATAACTATGGAATTTGGCTGCGATATCAAAGTCGAACTGGTTATCATAACATGTACAAGGAATACCGGGATGCCACCCTCAATGGTGCCGTTGAACAAATGTACACTGAAATGGCATCACGTCACCGAGTGAGGTTTCCATGCATCCAGATCATCAAGACAGCCACCATCCCTGCAAAGCTGTGCAAAAGAGAGAGCTCTAAGCAGTTTCACAATTCTAAAATCAAGTTCCCATTGGTGTACAAGAAGGTGAGGCCGCCAAGTAGGAAGCTGAAGACAACATACAAGGCATCACGGCCCAACTTGTTTATGTGA 2352 0.4379 MPLQGGGFMNHDKEFPSQKQTRIFSGSKQDDNITMALKFSLVLVLLVICSCTVEVISRNNNLNRLKKNDSSLAAIKMPDHPSFNTVSSSANNDCSFSNSEKFGHSGVTTSDEDTVDDYVATPHKQLLKLDLKRRPVTVSEDAEPKKPVIDFTIRDLTRIQTLHRRVIEKKNQNTVSRLQKTQLKSNQIKAVTPAPAAVPEYFKNGYPGRLVATLESGASLGSGEYFMDVFVGTPPKHFSLILDTGSDLNWIQCVPCYVCFEQSGPHYDPKDSSSFKNISCHDKRCRLVSSPDPPHACKNENQTCPYFYWYGDSSNTTGDFALETFTVNLTTSTGKSEFRRVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFASQLQSLYGHSFSYCLVDRNSNISSKLIFGEDKKLLSNPNLNFTSFVSGKENPVDTFYYVQIKSVMVGGEVLKIPKETWLVSSEEEGVGGGGGTIIDSGTTLTYFAEPAYEIIKEAFMKKIKGYHMVEEEGPVPLKLCYNVSGFEAIELPDFGILFEDGAVWDFPVENYFIEIEPGGVVCLAILGTPHSALSIIGNYQQQNFHILYDLKNSRLGYAPVNCADSCFLPLRSSSQMVSFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIYEKNPTKIDNYGIWLRYQSRTGYHNMYKEYRDATLNGAVEQMYTEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVYKKVRPPSRKLKTTYKASRPNLFM 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0210 783 FunFam 60S ribosomal protein L18a 677 752 - -
Lele27g0210 783 PANTHER OS07G0603500 PROTEIN-RELATED 179 592 - -
Lele27g0210 783 Gene3D - 601 675 - -
Lele27g0210 783 SUPERFAMILY RplX-like 676 751 - -
Lele27g0210 783 FunFam Aspartyl protease family protein 404 595 - -
Lele27g0210 783 Gene3D Acid Proteases 205 403 IPR021109 -
Lele27g0210 783 SUPERFAMILY Acid proteases 218 594 IPR021109 -
Lele27g0210 783 Pfam Xylanase inhibitor N-terminal 225 402 IPR032861 -
Lele27g0210 783 Gene3D Acid Proteases 407 598 IPR021109 -
Lele27g0210 783 Pfam Xylanase inhibitor C-terminal 430 588 IPR032799 -
Lele27g0210 783 Hamap 50S ribosomal protein L18Ae [rpl18a]. 611 674 IPR028877 -
Lele27g0210 783 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 240 251 IPR001969 GO:0004190|GO:0006508
Lele27g0210 783 PRINTS Pepsin (A1) aspartic protease family signature 231 251 IPR001461 GO:0004190|GO:0006508
Lele27g0210 783 PRINTS Pepsin (A1) aspartic protease family signature 466 477 IPR001461 GO:0004190|GO:0006508
Lele27g0210 783 PRINTS Pepsin (A1) aspartic protease family signature 564 579 IPR001461 GO:0004190|GO:0006508
Lele27g0210 783 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 612 733 IPR023573 GO:0003735|GO:0005840|GO:0006412
Lele27g0210 783 Gene3D - 676 748 - -
Lele27g0210 783 ProSiteProfiles Peptidase family A1 domain profile. 225 588 IPR033121 -
Lele27g0210 783 CDD pepsin_A_like_plant 224 592 IPR034161 -
Lele27g0210 783 FunFam 60S ribosomal protein L18a 606 676 - -
Lele27g0210 783 FunFam Eukaryotic aspartyl protease family protein 201 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0210 Lele-ChrLele27 1635146 1640865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0210 583 783 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 84.080 4.06e-117 351