Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0197 ATGGACGAGGAACGCCTCCCTCACTCTCTTATATTCTCTTCTCCAGAAAGCGATTCAATGGAGTCAGAGGATAAGCATTCTTTGGATTCTAAGTCAGCCTGTGGATCGGCAGGTCCTTATGGGATCTCTCCACGAAGTGTTGCTAAAAAAATGGAAAGCAGTGCTTGGGGGATACCGCATGGGGCTGGGGCACATCATGCATCTAATGATGCTAGCTTGTTTTCAAGTTCTCTGCCTGTTCTTCCACATGAAAAGTTGAATTTCCCTGATTCAGCGTGTTATGGCCAACCTTTTGATGATAACATGCCAATGTTTAATAAAGACCACAAAGAAGTTGAGGGGTATGATCCACTTGAAGATGTTGAAACCAATGCTATTGGAAACATGCTTCCTGATGATGAAGAGCTATTAGCTGGGATAACGGATGATTTTGACCTGAGTAGATTGCCCAGCCAACTGGAGGATTTGGATGATAATGATTTGTTTGGTAGTGGAGGAGGGCTAGAAATGGATTTTGAGCCCCAAGAGAGTCTTAAGATTGGCATGTCAAAGATGAGCATTACTGATGGAGTTGCTTCAAATGGTATTGGCCATTATGTACTTCCAAATGGTGTGGGACCTGTGGCTGGGGAGCATCCCTATGGAGAACATCCATCAAGAACATTATTTGTGAGAAACATTAACAGTAACGTTGAGGATTCTGAATTAAGATCACTATTTGAGCAATATGGGGATATTAGAACTCTGTACACTGCATGCAAGCATAGGGGTTTTGTGATGATATCTTACTATGATATTCGAGATGCTCGTACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGACATTCATTTTTCAATTCCTAAGGACAACCCCTCTGAAAAAGATGTCAACCAAGGAACTCTTGTAGTGTTCAATTTGGATCCGTCAGTATTAAATGATGATCTTCGACTAATATTTGGGGCTTATGGGGAGGTCAAAGAGATAAGGGAAACACCACATAAGAGACACCATAAATTTATTGAATTTTACGATGTTAGAGCAGCTGAGGCCGCACTTAAGGCATTAAATCGATGTGATATTGCAGGGAAACGCATCAAACTTGAACCCAGCCGCCCTGGTGGGGCACGAAGAAATTTGATGCAACAACTGAGTCAAGAGCTGGACCTAGATGAAGCCCGGACTTTTAGACATCAAGTAGGTTCACCATTGGCCAGTTCCCCTCCTGGTAACTGGGCACAATTTGACAGTCCAGTTGAACATAGTTATTTAAGTTCTTTTAGCAAGTCTCCGATAAATAGCAACCATTCATCTGGATTGCCCGCACTTCTCTCCCCTCATGCATCAAACTCTACAAAGATTGCTCCAATTGGCAAGGACTCAGGAAGAGTTAATAGTTCAAATCAGACATTTACAAATGCAGTATCAACACAAGGAGTAGCTTTTCAGAATTCACTGTCCTTTCCTGAGCTAAAAGCAAATGCAAGTTCTAGACCCGTTGCTGCTTTTGGTGAATCAAGCTCAACTTCATCAAGCATCGGAACCCTATCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTACTTCTTACACAGAGAATTCAAACACTTCTGCTTGGTCTTCTTCTTCTTCTGGGCTCCCTTTAACATCTAGTGGTGAGAAGCAGGGTTTCCCATATACTAATCGATACAGTTCCTTTCTTGGTTCTCGCTCCCATCATCATGTGGGATCTGCTCCTTCTGGCCTTCCTCTTGAAAGGCATTTTAACTATTTCCCAGAGTCTCCAGAAACTTCTTTCATGAGTCCAGTTTCATATGGGAGTATAAATCACAGTGATGGGAACTTCATGAACATGGGTGTTCGTGCAGCTACTGGGGTTATTGGCCTTTCAGGAAATACAACTGAAATCAATTCACCTAGTTTCAGGTTGATGTCACTGCCCAGGCATAGTTCTTTATTTCTTGGAAATGGTTCTTATTCTGGAGTGGTTGCAAATAATGAGGGGTTTACCGAACGTGTTCGGAGTCGGCGACCTGAAAATAGTGTGACACAAATTGATAACAAGAAGCAGTATCAACTTGATCTAGACAAAATTATCAGTGGGGAAGATGCAAGGACTACTTTAATGATTAAAAACATTCCTAATAAGTACACTTCAAAGATGTTGCTATCTGCAATTGATGAGAACCACCGGGGCACTTATGACTTTCTCTACTTGCCCATTGACTTTAAGAACAAGTGTAATGTGGGTTACGCTTTCATCAATATGGTGTCTGCTTCACATATTGTTCCTTTCTATAAGGAATTTAATGGGAAGAAATGGGAAAAATTTAATAGTGAAAAAGTTGCATCACTGGCTTATGCACGGATCCAGGGAAAGGCTGCACTTGTTACACACTTTCAAAATTCAAGCTTGATGAATGAGGATAAGCGATGCAGGCCAATTCTCTTCCATTCAGAGGGCCAAGAGATTGTTGACCAGGAACCTTTCATATCCAGCAATTTGAACATTTGCATCCGTCAACCAGATGGGTCATACTCAGGTGATTTGTTGGAAAGCCCGAAGGGCGATTTGGACGACAAGCTGTAG 2604 0.4205 MDEERLPHSLIFSSPESDSMESEDKHSLDSKSACGSAGPYGISPRSVAKKMESSAWGIPHGAGAHHASNDASLFSSSLPVLPHEKLNFPDSACYGQPFDDNMPMFNKDHKEVEGYDPLEDVETNAIGNMLPDDEELLAGITDDFDLSRLPSQLEDLDDNDLFGSGGGLEMDFEPQESLKIGMSKMSITDGVASNGIGHYVLPNGVGPVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRDARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDPSVLNDDLRLIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRCDIAGKRIKLEPSRPGGARRNLMQQLSQELDLDEARTFRHQVGSPLASSPPGNWAQFDSPVEHSYLSSFSKSPINSNHSSGLPALLSPHASNSTKIAPIGKDSGRVNSSNQTFTNAVSTQGVAFQNSLSFPELKANASSRPVAAFGESSSTSSSIGTLSGPQFLWGSPTTSYTENSNTSAWSSSSSGLPLTSSGEKQGFPYTNRYSSFLGSRSHHHVGSAPSGLPLERHFNYFPESPETSFMSPVSYGSINHSDGNFMNMGVRAATGVIGLSGNTTEINSPSFRLMSLPRHSSLFLGNGSYSGVVANNEGFTERVRSRRPENSVTQIDNKKQYQLDLDKIISGEDARTTLMIKNIPNKYTSKMLLSAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSASHIVPFYKEFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQEIVDQEPFISSNLNICIRQPDGSYSGDLLESPKGDLDDKL 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0197 867 Gene3D - 304 400 IPR012677 -
Lele27g0197 867 FunFam MEI2-like protein 5 isoform 2 209 303 - -
Lele27g0197 867 SMART rrm1_1 221 289 IPR000504 GO:0003723
Lele27g0197 867 SMART rrm1_1 712 788 IPR000504 GO:0003723
Lele27g0197 867 SMART rrm1_1 306 374 IPR000504 GO:0003723
Lele27g0197 867 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 293 IPR000504 GO:0003723
Lele27g0197 867 CDD RRM3_MEI2_like 713 798 IPR034454 -
Lele27g0197 867 CDD RRM1_MEI2_like 219 295 IPR034453 -
Lele27g0197 867 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 378 IPR000504 GO:0003723
Lele27g0197 867 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 372 IPR000504 GO:0003723
Lele27g0197 867 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 286 IPR000504 GO:0003723
Lele27g0197 867 Gene3D - 209 303 IPR012677 -
Lele27g0197 867 MobiDBLite consensus disorder prediction 1 46 - -
Lele27g0197 867 Pfam RNA recognition motif 2 710 806 IPR007201 -
Lele27g0197 867 SUPERFAMILY RNA-binding domain, RBD 712 797 IPR035979 GO:0003676
Lele27g0197 867 SUPERFAMILY RNA-binding domain, RBD 217 380 IPR035979 GO:0003676
Lele27g0197 867 FunFam Protein MEI2-like 1 304 399 - -
Lele27g0197 867 PANTHER RNA RECOGNITION MOTIF-CONTAINING 48 827 - -
Lele27g0197 867 CDD RRM2_MEI2_like 304 374 - -
Lele27g0197 867 MobiDBLite consensus disorder prediction 538 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0197 Lele-ChrLele27 1510133 1517674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0197 217 371 Eukaryotic Initiation Factors Gene Family AT1G71770 26.829 5.79e-11 64.3