Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0166 ATGGCCATGAATTTTGAAGTGTTTGTTGATCTTTGTTACGGTTCTGATATGATACATATGAATATTGGGAGTAATGCAGGAAAAAAGCTAATGAATCATGTTCTTGATTTGTGCTCCAAGGAAAACGTGTCTGAGGTTTACTTGCATGTGATGGCAGGCAATGGAGATGCCATAAACTTTTACAAGAAATTTAGTCAATCACCCTTCTTCTTCTCCCACTCTGCAATCCAATATCATTCCTTGGCAATCGCAATGCCTTCTACCTGCATTGTTCCTTCTGGTCACTCCGTCTTCTCTCCTATACCCTTCACTTCTTCCTCCGCATTTCCCTCTTCTCAGAGATTGAAACCTCGAATTCTAACGAAAAATGTGCCTTCTTCTCTGAGATCACCTAGTAGAGGAGGACTAGTTGTAAGAGCCGCTATTTTCATGGAGAAAGAGACGCCTGAATCTGAACGCCCACTAACTTTTCTCAGAGAATCTGATGGTCATGATCACACCACTTCTTCCTCTTCTTCTGTTAGGGCTCGCTTTGAGAAGATGATAAGGGAGGTTCAGGACAGCGTTTGCAGTGCACTTGAAGCTGCCGATGGTGGAGCCAAGTTTAAGGAGGATGTTTGGTCTAGGCCTGGTGGTGGCGGAGGAATCAGTAGGGTTCTTCAAGACGGAGCCGTTTTTGAGAAGGCTGGGGTTAATGTGTCTGTTGTTTATGGTGTGATGCCGCCTGAGGCTTATCGTGCTGCCAAAGCTGCTCCAGTTGATCAGAAACCTGGCCCGGTTCCTTTCTTTGCGGCTGGAATCAGCTCGGTTTTACACCCAAAGAACCCGTTTGCCCCAACAGTGCATTTCAATTATCGGTATTTTGAAACTGATACTCCCAAAGATGCTCCTGGAGCACCAAGACAATGGTGGTTTGGTGGTGGGACTGACTTGACCCCTTCTTACATTTTTGAGGAGGATGTCAAGCATTTCCATTCGATTCAAAAACGTGCTTGTGACAAGTTTGATCCTACATTCTATCCTCGATTCAAGAAATGGTGTGATGATTACTTCTATATCAAGCATCGGAATGAGAGGAGAGGGCTTGGAGGAATATTTTTCGATGATCTAAATGACTATGATCAGGAGATGCTACTCTCCTTTGCCACCGAATGTGCCAATTCTGTCATTCCTGCTTACATACCCATAGTAGAGAAAAGGAAGGACACGGCTTTTACAGATCAGCACAAAGCATGGCAACAATTGCGAAGGGGACGATATGTTGAATTCAATTTGGTTTATGATCGGGGCACAACATTTGGACTAAAAACAGGAGGGAGGATAGAGAGCATTCTTGTTTCTCTTCCACTAACCGCTCGGTGGGAATATAATCATAAACCTGAGGAAGGAAGTGAGGAATGGAAGCTTTTAGATGCTTGCATCAACCCAAAGGAATGGATCTAG 1443 0.4428 MAMNFEVFVDLCYGSDMIHMNIGSNAGKKLMNHVLDLCSKENVSEVYLHVMAGNGDAINFYKKFSQSPFFFSHSAIQYHSLAIAMPSTCIVPSGHSVFSPIPFTSSSAFPSSQRLKPRILTKNVPSSLRSPSRGGLVVRAAIFMEKETPESERPLTFLRESDGHDHTTSSSSSVRARFEKMIREVQDSVCSALEAADGGAKFKEDVWSRPGGGGGISRVLQDGAVFEKAGVNVSVVYGVMPPEAYRAAKAAPVDQKPGPVPFFAAGISSVLHPKNPFAPTVHFNYRYFETDTPKDAPGAPRQWWFGGGTDLTPSYIFEEDVKHFHSIQKRACDKFDPTFYPRFKKWCDDYFYIKHRNERRGLGGIFFDDLNDYDQEMLLSFATECANSVIPAYIPIVEKRKDTAFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYNHKPEEGSEEWKLLDACINPKEWI 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0166 480 Pfam Acetyltransferase (GNAT) family 23 64 IPR000182 GO:0016747
Lele27g0166 480 Gene3D Coproporphyrinogen III oxidase, aerobic 143 480 IPR036406 GO:0004109|GO:0006779
Lele27g0166 480 Pfam Coproporphyrinogen III oxidase 178 479 IPR001260 GO:0004109|GO:0006779
Lele27g0166 480 PANTHER COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL 141 480 IPR001260 GO:0004109|GO:0006779
Lele27g0166 480 FunFam oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic 139 480 - -
Lele27g0166 480 ProSitePatterns Coproporphyrinogen III oxidase signature. 344 368 IPR018375 GO:0004109|GO:0006779
Lele27g0166 480 Gene3D - 23 69 - -
Lele27g0166 480 PRINTS Coprogen oxidase signature 440 466 IPR001260 GO:0004109|GO:0006779
Lele27g0166 480 PRINTS Coprogen oxidase signature 412 439 IPR001260 GO:0004109|GO:0006779
Lele27g0166 480 PRINTS Coprogen oxidase signature 303 325 IPR001260 GO:0004109|GO:0006779
Lele27g0166 480 PRINTS Coprogen oxidase signature 200 216 IPR001260 GO:0004109|GO:0006779
Lele27g0166 480 PRINTS Coprogen oxidase signature 217 238 IPR001260 GO:0004109|GO:0006779
Lele27g0166 480 PRINTS Coprogen oxidase signature 264 288 IPR001260 GO:0004109|GO:0006779
Lele27g0166 480 PRINTS Coprogen oxidase signature 340 369 IPR001260 GO:0004109|GO:0006779
Lele27g0166 480 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 24 64 IPR016181 -
Lele27g0166 480 SUPERFAMILY Coproporphyrinogen III oxidase 170 480 IPR036406 GO:0004109|GO:0006779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0166 Lele-ChrLele27 1260019 1265473 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lele27g0166 Coprogen_oxidas 5.2e-138 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1914 25 26829989 26841237 Lele27g0166 27 1260019 1265473 hybridization
Lele26g1956 26 23036275 23039891 Lele27g0166 27 1260019 1265473 hybridization