Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0159 ATGAAACTTGCCTCGTTCTCAGAACTTGAATATATAAGTATGGCTTCTTCTTTTTCCCCGGTTGGTGTTGTTGGTGATGTTGTGAACGTACATATGCAGGGAAATGGATCCCCTCCCGTGCCGGCTGAAGTAATCGGATTTGGTGTTGAAGTTGGCGCACAACTCTCCCTCCTCACTCCACTATGGTCAGTTTTGTGGGTACTCTTATATCCTTCAGTTACCGCTCTCTATGTTGCTTCTTGTTTTTCTTCGTTTCTTACTTGGAGCACTACCAATCTAGCACCTTGGGCATTCCTGTTAAATCGAAGTGGTGGAAGGGACCGGTTTAGAAGGGATTACCCTTCTAGATTTGAAGATAAAGGCAACAGTGGGCGTAGCAACAGTAACAACCCCCCTTCCAGGCACCTTTGGGTTGGGAATCTAGCTCACAGTATAACAGAGAATGAACTTGCTCGTCATTTTCTACAATTTGGACCACTTGAAAGTGTTGCATTCCAGCCTGGTCGTAGCTATGCTTTCATCAATTTCAGAAGGGATGAAGATGCTATTGATGCTTTGAACGAACTTCAAGGTTTTCCTGTTGCAGGCAACCCGCTTAGAGTTGAATTTGCGAAGGCGGATAAGCCATCATCACTAACACGTGATGAAGACTACTCTTGGGATGAACGAAGCTCAGGGAGAAGAGGATCTCCTTTCAGTCAAAGAGAGTTTAGAGGACGCCATGGTAGTCCTGAGCCTCCATATCCTGACAAATCCAAGCTGTCTGATAAAAGCCCAGACCCCAGTGAGGTATTGTGGATAGGATTTCCATCTCAATTGAATGTGGATGAGCTAGCTTTGAGAAAGGTTTTTTCTCCATTTGGTGAGATAGAGAAGATTACAACGTTTCCAGGTCGTAGTTATGCTTTTGTTCGTTTTAGGAGTCTAACATCAGCACGCAGAGCAAGAGATTCTCTGCAGGGAAAGTTATTTGGAAATCCACGTGTACATATTTGTTTTGCAAAGAGTGAAGCTGGTTCATCAAGCAGTGGGAGATTTTCAATTAATACCCCTCCGTCCCCATTTTACACATCAAACGGTCTTCATGGATCGACTGAGAACTTGAGACAAGATAGGAGTATTGCAGGCTTCAGTGGAGATCGTGGAGCTAGTCCCCCTAATATATTCCCAAAATGGGACTTGGCAGATTCGGATACCTATGATTTAGATAGAAGGGGTTCTTCACGCCCTAGTGGAGTCAGTTCATATGAACAAAGGAGAGTTGGTGAAAAGGTGCCACCATTCGGGGTACTACAAGGCAGTTTTGAACACTCAATAAGTCCTTCTAGAGATAGACACGCTCATCTAGGTACTTTTCCTAAGAGATTTCCTCAAAAGCATGCATTATTTGAAGATCCGCGGGACTTTCCAGATGATGTGTATTATCAACGTGACACTAAAAAACTGAAGACGGGATCTCTTCCTCATGAAAAGGAGCTTCCAGAGTATCCTCTTTCTGATTTAGAAAGGCAGAGACGTACGCTCCCCAGGTTATTAACCGACTTGCCCCAACATGAGGGCCTTGATAAAAGAATTGATGCTGGACCTGTTGTGCATAGACAAACTTTTGATCCCGAACCAGATTCCCCTTTTGCTCAGTCAGATAGGAGTGAGCGCTGGAAGCCTAGTGATAGTTTCCACGTGGGTCCCAGTGCTCTGCAATCGTATCCTATTGAGAAGAGAAGACTCACACCTGAACCTAGTAACTCATCTTTAACTGAGTGGAAATGGGAAGGAACCATTGCCAAAGGGGGAACACCTGTTTGTCGTGCTCGCTGCTTCCCCGTGGGAAAAGTCATGGATATCATGTTACCTGAATTCTTGGATTGCACAGCGAGGACTGGTCTAGACATGCTTTCAAAGCATTATTACCAAGCGGCTGGTGCTTGGGTTGTTTTCTTTGTGCCTGAAAGCGATGTTGACATTGAATACTACAATGAATTCATGCATTATCTGGAGGAAAAGCGTAGGGCTGCAGTTGCTAAGATAGATGACAGGAACACCTTGTTTCTTGTACCTCCATCATATTTCTCAGAGAAAGTATTGAAGGTACCTGGAAAGTTGAGCATATCTGGTGTGGTTCTAAGGTTGGAGCATCCTGGTTCATCTCAAGGGTCCATGCACAATCAAAATGAAGCAAAAGATGCAAGGTTGTCGTCATATCATGGTGATACATTGTATCGAATGCCACCAATGCCATCAGATCGTAGTCCCCCACCATTTACATCCATGCCATCAGCCCTGCCTACCACAGTTTCTGGTTCAGTTCATGCCATAGTTGGCCCATCTGGTTCTCATGATGGAAGAAGGGGACACGATTATCCAGTTCAACAGCAGAACCATACATCTGGGTCAAATTGGTCTGCTAACAATCTTCAGACCTTGATCTCCAATAGAAATTTACCATTACAACTATCAAATGGTGCTGTTGAACCTCTTGCTCAGGATCATCAGCTGAGCATTCAGAGGCCCCTGGATTCTTTATCTCTGCCTGGGGGATCCCCGCAACAAGAGCAGCTCGCACAACTAGCAGCATCTCTTCTTGAGCAGCAGAGGCAATCAGGAAGCGCTCTGAGTGTATCCGCGTCGCATGATCGGAGGCAAACTCATAACGGGTCTGACACCTCGAGACCATCCCAAAAATACCCGATTCAAAATAACTCAACCGTGCCTCATGGATCACAGATGGTTCAAAGAGAGCCACAGAGAGCTGCCAACGGAAATCAGCAACCGCTAACCGGTAGTAACTTGCAGCAAGATGCAGAAGCAGATCCACAGAAGCGTCTACAAGCAACATTACAGTTGGCTGCAGTTCTTCTTCAGCAAATTCAGCAAGGGAAAGGAAGTTGA 2889 0.4531 MKLASFSELEYISMASSFSPVGVVGDVVNVHMQGNGSPPVPAEVIGFGVEVGAQLSLLTPLWSVLWVLLYPSVTALYVASCFSSFLTWSTTNLAPWAFLLNRSGGRDRFRRDYPSRFEDKGNSGRSNSNNPPSRHLWVGNLAHSITENELARHFLQFGPLESVAFQPGRSYAFINFRRDEDAIDALNELQGFPVAGNPLRVEFAKADKPSSLTRDEDYSWDERSSGRRGSPFSQREFRGRHGSPEPPYPDKSKLSDKSPDPSEVLWIGFPSQLNVDELALRKVFSPFGEIEKITTFPGRSYAFVRFRSLTSARRARDSLQGKLFGNPRVHICFAKSEAGSSSSGRFSINTPPSPFYTSNGLHGSTENLRQDRSIAGFSGDRGASPPNIFPKWDLADSDTYDLDRRGSSRPSGVSSYEQRRVGEKVPPFGVLQGSFEHSISPSRDRHAHLGTFPKRFPQKHALFEDPRDFPDDVYYQRDTKKLKTGSLPHEKELPEYPLSDLERQRRTLPRLLTDLPQHEGLDKRIDAGPVVHRQTFDPEPDSPFAQSDRSERWKPSDSFHVGPSALQSYPIEKRRLTPEPSNSSLTEWKWEGTIAKGGTPVCRARCFPVGKVMDIMLPEFLDCTARTGLDMLSKHYYQAAGAWVVFFVPESDVDIEYYNEFMHYLEEKRRAAVAKIDDRNTLFLVPPSYFSEKVLKVPGKLSISGVVLRLEHPGSSQGSMHNQNEAKDARLSSYHGDTLYRMPPMPSDRSPPPFTSMPSALPTTVSGSVHAIVGPSGSHDGRRGHDYPVQQQNHTSGSNWSANNLQTLISNRNLPLQLSNGAVEPLAQDHQLSIQRPLDSLSLPGGSPQQEQLAQLAASLLEQQRQSGSALSVSASHDRRQTHNGSDTSRPSQKYPIQNNSTVPHGSQMVQREPQRAANGNQQPLTGSNLQQDAEADPQKRLQATLQLAAVLLQQIQQGKGS 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0159 962 MobiDBLite consensus disorder prediction 400 420 - -
Lele27g0159 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 336 IPR000504 GO:0003723
Lele27g0159 962 MobiDBLite consensus disorder prediction 865 879 - -
Lele27g0159 962 MobiDBLite consensus disorder prediction 532 561 - -
Lele27g0159 962 MobiDBLite consensus disorder prediction 788 802 - -
Lele27g0159 962 PANTHER RNA RECOGNITION MOTIF-CONTAINING 129 956 - -
Lele27g0159 962 Gene3D - 250 345 IPR012677 -
Lele27g0159 962 SUPERFAMILY RNA-binding domain, RBD 121 211 IPR035979 GO:0003676
Lele27g0159 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 328 IPR000504 GO:0003723
Lele27g0159 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 199 IPR000504 GO:0003723
Lele27g0159 962 MobiDBLite consensus disorder prediction 886 938 - -
Lele27g0159 962 CDD RRM3_Spen 136 205 - -
Lele27g0159 962 Pfam SPOC domain 583 698 IPR012921 -
Lele27g0159 962 Gene3D - 116 212 IPR012677 -
Lele27g0159 962 SMART rrm1_1 264 332 IPR000504 GO:0003723
Lele27g0159 962 SMART rrm1_1 135 202 IPR000504 GO:0003723
Lele27g0159 962 SUPERFAMILY RNA-binding domain, RBD 253 337 IPR035979 GO:0003676
Lele27g0159 962 MobiDBLite consensus disorder prediction 233 258 - -
Lele27g0159 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 206 IPR000504 GO:0003723
Lele27g0159 962 MobiDBLite consensus disorder prediction 865 940 - -
Lele27g0159 962 MobiDBLite consensus disorder prediction 206 259 - -
Lele27g0159 962 MobiDBLite consensus disorder prediction 736 802 - -
Lele27g0159 962 FunFam RNA recognition motif (RRM)-containing protein 249 342 - -
Lele27g0159 962 MobiDBLite consensus disorder prediction 112 132 - -
Lele27g0159 962 MobiDBLite consensus disorder prediction 207 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0159 Lele-ChrLele27 1221069 1231305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0159 126 335 Eukaryotic Initiation Factors Gene Family AT4G34110 23.318 1.20e-06 50.4