Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0145 ATGGGCCTCTCAAGTCTGCCAGCTCCATCTGAAGGAGTACTGTGTGTGCTTCTGGTTAACACTGCATTTTCCATATCCTTAGTTAAAGGCATTGTTAGAACAATCCTTCACATTGTTGGTATCAGCCTTTCATCATCACCCACCACCCCATCATCAGCATCACCATCACCATCACCACCATCATCATCATCAGAATCATCCCCATCTCCAGATATCTCTCAAGACCTGCCTGAGTCATTCCAATTCGACCTCTGTTCGTCGGAGAATTACATTGAAGAGTTCAGAAGCCGGACACCGACAATCCTGTACGACAGTGTGTGTGGCTGCAAGCAACCTGAAGAACATGAATGCTCTGTATGTCTGAGTAAATTTGAACCACAATCTGAGATAAACCGCTTGTCCTGTGGCCATCTATTCCACAAAGATTGCTTGGAGAAGTGGCTGGCCTACTGGAACATTACATGCCCACTTTGCAGGACTCCATTGTTGCCTGAAGAAGAGGTTTGTTCTTGCATTTGGTAA 522 0.4579 MGLSSLPAPSEGVLCVLLVNTAFSISLVKGIVRTILHIVGISLSSSPTTPSSASPSPSPPSSSSESSPSPDISQDLPESFQFDLCSSENYIEEFRSRTPTILYDSVCGCKQPEEHECSVCLSKFEPQSEINRLSCGHLFHKDCLEKWLAYWNITCPLCRTPLLPEEEVCSCIW 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0145 173 Pfam Ring finger domain 116 159 IPR001841 -
Lele27g0145 173 PANTHER - 1 167 IPR044249 -
Lele27g0145 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 163 IPR013083 -
Lele27g0145 173 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Lele27g0145 173 SUPERFAMILY RING/U-box 105 165 - -
Lele27g0145 173 MobiDBLite consensus disorder prediction 44 77 - -
Lele27g0145 173 SMART ring_2 117 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0145 Lele-ChrLele27 1144888 1145409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0145 1 173 C3H Transcription Factor Family AT2G04240 59.091 2.28e-59 180
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1930 25 26965790 26966299 Lele27g0145 27 1144888 1145409 hybridization
Lele26g1973 26 23156077 23156571 Lele27g0145 27 1144888 1145409 hybridization