Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0123 ATGCTGCGGGTGGGAAGTGGGAAGCGGGAAGCTGTGGCAGATGCTAGGATGGCAATGCGAAAGGCATCAGTGAAGAAAGAAGTAGGGTGTAGTTGGGTCACCATGAAGGATGGTGTTCATGTATTCGTGGCTGGAGATCAAAAACACCCAGAGAAACAAAAAATTCATGAAAAACTCAAGGAACTAACTAGGAAAATGAGGGATGCTGGTTATGTTCCAGAAACCAAATATGCGCTGTTTGATCTTGACCCTGAAAGCAAAGAAGAAATATTGATCCATCATAGTGAAAAATTAGCAGTTGCTTTTGTTCTTACCCGGAAATCTAAACTACCAATTAGGATAATGAAAAATCTTCGTGTTTGTGGTGACTGTCACGCTGCTTTCAATGATAAGCAGATGGTAACATGTTTTAAGTGCAGAAGGGAGAGAGATGCTGAAAAAATAGGAATGAAACCATCAAATAACATATGGATTCAGCGCCAACAATGTCCGTGTGGAGATTGGAAGTGTTTTATCAAGTATGATGGAGATGATCAGATATCAGCAAGATCTCAGGCCACAAAGACTGATACAGTGCCTTCATCATCATCAGAAGCTGTCTTCACTCCTTATGTAGGTCAAATATTCAAAAGCGATGATGATGCATTTGAATACTATAGCAATTTTGCCCGGAAGAATGGATTTTCAATCAGAAAAGCTCGCTCAACTGAAAGCCAACATTTAGGAATATATAGAAGAGATTTTGTTTGTTACAGATCTGGGTTCAATCAACCAAGAAAAAAGGCCAATGTGGAGCATCACAGAGAGCGGAAATCTGTACGATGTGGATGTGATGCAAAGTTATACTTGACAAAGGAAATTGTTGATGGTGTTGCTCAATGGTATGTGTCACAATTTAGTAATGTTCATAACCATGAGTTGTTGGAAGATGACCAAGTACGACTTCTACCAGCATATCGTAAAATACAAGAGGCTGATCAGGAACGCATTCTTCTACTGTCCAAAGCCGGATTCCCTGTGAACCGTATTTTGAAGGTGCTAGAGCTTGAAAAAGGAGTTCAGCCTGGACAGCTGCCTTTCATAGAAAAGGATGTTAGGAATTTTGTTCGGACTTGCAAGAAAGCAGTTCAAGAAAATGATGCTTTACTGACCGAGAAAAGAGAGAATGATATGCATGAACTTGTGGAGACCTGTAAAGCAATGATAGACAAGGATCCCAATTTCATTTTTGATTATACAGCTGATGCAAATGGTAAAGTTGAAAATATAGCTTGGTCAAATGGTGAATCTATTCGGGCATATTCTGTTTTTGGTGATGTAGTTACTTTGGACACCACGTACCGTTCTGTTACGTATGGATTACTTCTTGGGGTGTGGTTCGGCATTGGTAATAATGGAAATGCGATAATATTTGGGTTTGTCTTGTTACATGATGAAAGTTCTTATTCAGTTGCATGGGCTTTACAAACATTTGTACGATTTATGAGAGGGAGACATCCACAAACAATTATAACCGACATAGATCCAATTCTGGGAGATGCTATTTCCAAGGAGTTGTCTGAAACTAAACATGTTATATGCACTTGGCATATTCTATCAAAAATATCAAATTGGTTCTCTGTACCCCTGGGACTACAGTATGCAGATTTTAGGTTAGAGTTCAATATATTATGTCACATGGAGAGCATAGAAAATTTTGAACATCAGTGGGATCTTTTTGTAGCTCGATTCGGACTTGTTTCTGACAAGCACATAGCTTTGCTATTCTCGCTTCGAGCATCTTGGCCACTCTGCTATGTTAAGAGTTATTTTGTAGCTCGTTCGTTAACAGCCGAGTTTTCTCAATATTTGGATTCAACATTGAAAAGAATTCTAGATTCACAAACATGTCTACAAGGATTTTTTGAGCAGGTAGGTATTGTTGCCACCTCATCAATGTTGGCAAGAGAAGGGATGCATTACATGTGTGTAAAGACATGCATGCCTATTGAAGAACATGCAAGGAGTATTCTTACACCTTATGCTTTCAATGTGTTTCAAAATGAAACTGTGCTGTCAATGCAATATGCAACAACAGACCTGACCAATGGATCCTACCTTGTTCAGCACTACAAGAAAATGGATGAAGAGCGCCTCGTAATTTGGGAACCGTCTGATGAACAAATTCAATGTTCCTGCAAGGAATTTGAACATTCGGGAATATTGTGCAGGCATTCGATTCGTGTACTTACAACGAAGAACTACTTCCAACTACCTATGAAATATTTTCTCCCCCGGTGGCGACGAGAAAGTTTCTTGGCTCCTTTTGATGAACGAAATCCTCAGAGCAGTGATGAGTGTGCTCAAGCCTTTCATTCTTTGACTGCCACTCTGCTGACAGAATCATTAGTCTCCAAGGAACGGTTTAATTATGTTCATAGAGAACTCACTGGGATTCTTGAGCATGTTGAGAATATGGAAGCTGTGGATGAATTTGGTATCAATGTGGCTGCTGATAATGTTAGTGACTCCTAG 2514 0.3966 MLRVGSGKREAVADARMAMRKASVKKEVGCSWVTMKDGVHVFVAGDQKHPEKQKIHEKLKELTRKMRDAGYVPETKYALFDLDPESKEEILIHHSEKLAVAFVLTRKSKLPIRIMKNLRVCGDCHAAFNDKQMVTCFKCRRERDAEKIGMKPSNNIWIQRQQCPCGDWKCFIKYDGDDQISARSQATKTDTVPSSSSEAVFTPYVGQIFKSDDDAFEYYSNFARKNGFSIRKARSTESQHLGIYRRDFVCYRSGFNQPRKKANVEHHRERKSVRCGCDAKLYLTKEIVDGVAQWYVSQFSNVHNHELLEDDQVRLLPAYRKIQEADQERILLLSKAGFPVNRILKVLELEKGVQPGQLPFIEKDVRNFVRTCKKAVQENDALLTEKRENDMHELVETCKAMIDKDPNFIFDYTADANGKVENIAWSNGESIRAYSVFGDVVTLDTTYRSVTYGLLLGVWFGIGNNGNAIIFGFVLLHDESSYSVAWALQTFVRFMRGRHPQTIITDIDPILGDAISKELSETKHVICTWHILSKISNWFSVPLGLQYADFRLEFNILCHMESIENFEHQWDLFVARFGLVSDKHIALLFSLRASWPLCYVKSYFVARSLTAEFSQYLDSTLKRILDSQTCLQGFFEQVGIVATSSMLAREGMHYMCVKTCMPIEEHARSILTPYAFNVFQNETVLSMQYATTDLTNGSYLVQHYKKMDEERLVIWEPSDEQIQCSCKEFEHSGILCRHSIRVLTTKNYFQLPMKYFLPRWRRESFLAPFDERNPQSSDECAQAFHSLTATLLTESLVSKERFNYVHRELTGILEHVENMEAVDEFGINVAADNVSDS 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0123 837 SMART 26again6 722 749 IPR006564 GO:0008270
Lele27g0123 837 Pfam E+ motif 39 66 IPR046849 -
Lele27g0123 837 Pfam DYW family of nucleic acid deaminases 70 129 IPR032867 GO:0008270
Lele27g0123 837 ProSiteProfiles Zinc finger SWIM-type profile. 699 747 IPR007527 GO:0008270
Lele27g0123 837 Pfam FAR1 DNA-binding domain 217 308 IPR004330 -
Lele27g0123 837 Pfam MULE transposase domain 440 533 IPR018289 -
Lele27g0123 837 Pfam SWIM zinc finger 718 746 IPR007527 GO:0008270
Lele27g0123 837 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 192 818 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0123 Lele-ChrLele27 998821 1003110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0123 6 168 Acyl Lipid Metabolism Gene Families AT1G47580 34.831 1.19e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lele27g0123 DYW_deaminase 8.6e-31 CL0109