Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0108 ATGGTTGAGGCAAAGAAGGCTGTTCCTAGAGATGACCAGAACATACTGAACAGAAACAGTAGTAGCATCCAGGGTTCTCCTGGTCCAGGCCGCACAAGAAAGATATTTGTAGGAGGTTTAGCATCAACAGTTACAGAGAGTGATTTCAAGAATTACTTTGATCAATTCGGGACAATAACAGATGTTGTAGTGATGTATGATCACAACACTCAGAGGCCAAGAGGCTTCGGATTTATCACTTATGATTCCGAAGAAGCTGTTGAGAAGGTCTTACTTAAGACATTTCATGAACTGAATGGTAAAATGGTTGAGGTCAAGCGGGCAGTTCCTAAGGAATTGTCACCAGGACCAAACCGCAGCCCAATCAGTGGATATAATTATGGTATGGGTAGGGTCAATAGTTTCCTAAATGGCTTCACTCTGGGGTATACCCCAAGTGCTGTTGGAGGCTACGGACTGAGGATGGATGGTAGATTCAGTCCTGTTGCAAGTGGTCGAAGTGGATTTGCTCCTTTTGGATCTGATTATGGAATGGGTATGAATTTTGAGGTTGGCTTGAACCCTGGATTTGGAGGGAATGCAAACTTCAATAGCAATCTTAGCTATGCTCGGGGCTTAAATCCTTATTATGCTGGCAGCTCAAATAGGTTTGGGAGTCCTATTGGGTATGATGGTGGTAATGGAGGAAACAATTCTTTCTTCAGCTCTGTGACTCGAAACTTGTGGGGTGCTGGTGGTCTTAATTATGGAACAGGCTCTGCAAATTCCAATAATGCGTACATGGGATCGGGAAGTGGGAATGCTGGAGGAAACTCATTTGGGACTGGAGTGAACTGGGGTTCTTCAGGAGTTTCTGGTCAAGGTGCTTTGAACAATTTGTCACAGAGTAGTGGCAACCTTCGCTACGAAGGTGGTAACAATGGTTATGGTTTGGGTGCTGGAGGGTATGGTGGGAGCGGTGGTAGCAGTATTGGCCCAACTTCATCGTACTCCTCATCAAATGGTGTGTTTGATGGGGCCTTTACTGATTTTTACAATAATAGTTCAGTTTATGGGGATACCACTTGGCTATCTACAAATTCTGAGCGAGATGGGTCTGGTCCCCTTGGTTATGGTCTTGGTAGCGCAGCATCAGATGTTTCTGCCAAAAGCTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGACAGCCAAATAGAGGTAAGAGCTATTGTAATTACATTTTCTTGCTTATTCTCTTTCTTCCTCCTCCAGAAACACTTGTGTGGCTTCAATGGATAGGAGGAAAATAG 1296 0.4414 MVEAKKAVPRDDQNILNRNSSSIQGSPGPGRTRKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPNRSPISGYNYGMGRVNSFLNGFTLGYTPSAVGGYGLRMDGRFSPVASGRSGFAPFGSDYGMGMNFEVGLNPGFGGNANFNSNLSYARGLNPYYAGSSNRFGSPIGYDGGNGGNNSFFSSVTRNLWGAGGLNYGTGSANSNNAYMGSGSGNAGGNSFGTGVNWGSSGVSGQGALNNLSQSSGNLRYEGGNNGYGLGAGGYGGSGGSSIGPTSSYSSSNGVFDGAFTDFYNNSSVYGDTTWLSTNSERDGSGPLGYGLGSAASDVSAKSSPGYVGGYTVNKRQPNRGKSYCNYIFLLILFLPPPETLVWLQWIGGK 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0108 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 110 IPR000504 GO:0003723
Lele27g0108 431 SUPERFAMILY RNA-binding domain, RBD 26 131 IPR035979 GO:0003676
Lele27g0108 431 MobiDBLite consensus disorder prediction 1 30 - -
Lele27g0108 431 CDD RRM2_DAZAP1 31 110 IPR034131 GO:0003723
Lele27g0108 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 92 IPR000504 GO:0003723
Lele27g0108 431 Gene3D - 30 116 IPR012677 -
Lele27g0108 431 MobiDBLite consensus disorder prediction 13 28 - -
Lele27g0108 431 FunFam Heterogeneous nuclear ribonucleoprotein 1 30 117 - -
Lele27g0108 431 SMART rrm1_1 34 106 IPR000504 GO:0003723
Lele27g0108 431 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0108 Lele-ChrLele27 902064 903606 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0108 35 112 Eukaryotic Initiation Factors Gene Family AT2G36660 38.272 1.29e-06 48.9